Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021376
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 121 5e-28
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 117 1e-26
08_02_0657 - 19749835-19751942,19753123-19753561 95 3e-20
06_01_0057 - 483710-484309 29 3.4
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 29 4.5
01_01_0037 - 281681-281785,282559-282924 29 4.5
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 121 bits (292), Expect = 5e-28
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +2
Query: 221 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 400
L +G+ + CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 401 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F+ G
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRG 163
Score = 95.1 bits (226), Expect = 5e-20
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG
Sbjct: 161 VRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGG 214
Score = 89.4 bits (212), Expect = 2e-18
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +3
Query: 60 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 239
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 240 RKETV 254
RK+T+
Sbjct: 71 RKDTI 75
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 117 bits (281), Expect = 1e-26
Identities = 52/99 (52%), Positives = 67/99 (67%)
Frame = +2
Query: 221 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 400
L +G+ + CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 401 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F+ G
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRG 163
Score = 95.1 bits (226), Expect = 5e-20
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG
Sbjct: 161 VRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGG 214
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +3
Query: 60 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 239
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 240 RKETV 254
RK+T+
Sbjct: 71 RKDTI 75
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 95.5 bits (227), Expect = 3e-20
Identities = 38/88 (43%), Positives = 57/88 (64%)
Frame = +2
Query: 254 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 433
C D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG++G
Sbjct: 79 CYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISG 138
Query: 434 NLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
+LFE YLKPYFM+A RP+ + D F+ G
Sbjct: 139 DLFEPYLKPYFMDALRPVKKGDRFLVRG 166
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/57 (59%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEEEEALNAVGYDDIGG 672
VRG M AVEFKV++T+P+ IVA DT I CD G+P+KRE+EE L+ GYDD+GG
Sbjct: 164 VRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGPGYDDVGG 219
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 5/63 (7%)
Frame = +3
Query: 81 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 245
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 246 ETV 254
E V
Sbjct: 76 EAV 78
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 85 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 231
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 540 FELDGAHAPADMKVSSRW 487
F LDGAH+P M++ ++W
Sbjct: 331 FYLDGAHSPESMEICAKW 348
>01_01_0037 - 281681-281785,282559-282924
Length = 156
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 464 FMEAYRPIHRDDTFMSAGACAPSSSKWSKQIHH-HFASWLLIP 589
F EA+ P F+ AGA A W K ++ H A+++ +P
Sbjct: 75 FAEAFLPTLTAADFLRAGATAKPHKSWRKLLYRVHAATFVAVP 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,569,457
Number of Sequences: 37544
Number of extensions: 395563
Number of successful extensions: 1062
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -