Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021376
(674 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 133 5e-31
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 133 5e-31
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 133 5e-31
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 133 5e-31
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 133 5e-31
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 132 8e-31
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 97 5e-20
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 133 bits (322), Expect = 5e-31
Identities = 60/99 (60%), Positives = 71/99 (71%)
Frame = +2
Query: 221 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 400
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 401 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 111 bits (268), Expect = 2e-24
Identities = 49/55 (89%), Positives = 53/55 (96%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMRAVEFKVVET PSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGG
Sbjct: 154 VRGGMRAVEFKVVETHPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208
Score = 101 bits (241), Expect = 3e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +3
Query: 60 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 239
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 240 RKETV 254
R+E V
Sbjct: 64 RREAV 68
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 133 bits (322), Expect = 5e-31
Identities = 60/99 (60%), Positives = 71/99 (71%)
Frame = +2
Query: 221 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 400
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 401 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 114 bits (275), Expect = 2e-25
Identities = 50/55 (90%), Positives = 54/55 (98%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGG
Sbjct: 154 VRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208
Score = 101 bits (241), Expect = 3e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +3
Query: 60 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 239
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 240 RKETV 254
R+E V
Sbjct: 64 RREAV 68
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 133 bits (322), Expect = 5e-31
Identities = 60/99 (60%), Positives = 71/99 (71%)
Frame = +2
Query: 221 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 400
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 401 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 114 bits (275), Expect = 2e-25
Identities = 50/55 (90%), Positives = 54/55 (98%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGG
Sbjct: 154 VRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208
Score = 101 bits (241), Expect = 3e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +3
Query: 60 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 239
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 240 RKETV 254
R+E V
Sbjct: 64 RREAV 68
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 133 bits (322), Expect = 5e-31
Identities = 60/99 (60%), Positives = 71/99 (71%)
Frame = +2
Query: 221 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 400
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 401 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 114 bits (275), Expect = 2e-25
Identities = 50/55 (90%), Positives = 54/55 (98%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGG
Sbjct: 154 VRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208
Score = 101 bits (241), Expect = 3e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +3
Query: 60 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 239
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 240 RKETV 254
R+E V
Sbjct: 64 RREAV 68
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 133 bits (322), Expect = 5e-31
Identities = 60/99 (60%), Positives = 71/99 (71%)
Frame = +2
Query: 221 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 400
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 401 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 114 bits (275), Expect = 2e-25
Identities = 50/55 (90%), Positives = 54/55 (98%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGG
Sbjct: 154 VRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208
Score = 101 bits (241), Expect = 3e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +3
Query: 60 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 239
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 240 RKETV 254
R+E V
Sbjct: 64 RREAV 68
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 132 bits (320), Expect = 8e-31
Identities = 58/88 (65%), Positives = 66/88 (75%)
Frame = +2
Query: 254 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 433
CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TG
Sbjct: 7 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 66
Query: 434 NLFEVYLKPYFMEAYRPIHRDDTFMSAG 517
NLFEVYLKPYF+EAYRPI + D F+ G
Sbjct: 67 NLFEVYLKPYFLEAYRPIRKGDIFLVRG 94
Score = 114 bits (275), Expect = 2e-25
Identities = 50/55 (90%), Positives = 54/55 (98%)
Frame = +1
Query: 508 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGG
Sbjct: 92 VRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 146
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 97.1 bits (231), Expect = 5e-20
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = +1
Query: 535 FKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGG 672
FKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGG
Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,280,781
Number of Sequences: 237096
Number of extensions: 2023820
Number of successful extensions: 4270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4270
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -