Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021372
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    30   0.19 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.4  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   3.1  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.5  

>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 311 NALLPGLVTNEFNGEYAAKQYLTXFEQELEEKYYDTEKIPVPLLVAKMSQLHLEVYTQL 487
           N++L  +++ E+N     K+ L      +E +  + E I +      ++QLH ++Y Q+
Sbjct: 44  NSILQEIISTEYNYSVDLKKTLNEIIMPIEGQSMEREAIGICTCFKTLNQLHTKLYQQM 102


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -1

Query: 140  YLKFAINL*QNVYINSSWLFITHKSIYASYSLKEASF*LKILLNS 6
            Y+K+       + I+ ++++I H  I A +S ++     K+LL +
Sbjct: 2138 YIKYVFETMGKIEIDGNYMYIAHAIILALFSPRQLKLLRKVLLTN 2182


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 361 SILAVELVGNEPRKQ-SIFRKISLIIKVSVSQHHEPY 254
           S+  +E++G+  +K  SI +  ++I+KVS  +H  PY
Sbjct: 390 SLEGLEVLGDGGKKVISIMKNQNMIVKVSPYKHRYPY 426


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  NWLLLKNMMHRLIYE 76
           NWLL KN   RL+Y+
Sbjct: 162 NWLLAKNNAERLVYK 176


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +2

Query: 17  VFSIRNWLLLKNM----MHRLIYE**ITNYY*YKHFAISLLQILNINLKNGAFVRXRVRF 184
           V+SI N L LK      +  ++++  I+  +   HF I L Q L  N  NGA     + F
Sbjct: 393 VYSIFNDLALKGFENEKLEAILHQMEISLKHKSAHFGIGLAQSLPFNWFNGADPADWLSF 452

Query: 185 GKMGEDSKE 211
            K  E  K+
Sbjct: 453 NKQIEWLKQ 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,216
Number of Sequences: 5004
Number of extensions: 39225
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)