Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021372
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0278 - 28111655-28112531,28113896-28114029,28114131-281149...    32   0.34 
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    29   1.8  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    28   4.2  
01_06_1062 + 34186479-34186808                                         28   4.2  
12_02_0512 - 19889845-19890468,19890958-19891413,19891727-19892215     28   5.5  
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174...    27   9.7  

>01_06_0278 -
           28111655-28112531,28113896-28114029,28114131-28114992,
           28115636-28115735,28115848-28115939,28116031-28116122
          Length = 718

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 296 TYFSENALLPGLVTNEFNGE--YAAKQYLTXFEQELEEKYYDTEKIPVPLLVAKMSQLHL 469
           TY SENAL+PG     F+ E    A ++    E  + E    T +IP   +  +   L  
Sbjct: 52  TYLSENALIPGSANTLFSTEDVQEANRFAKGIEAAIGESRGGTTEIP-KFIAQQTKNLGA 110

Query: 470 EVY 478
           EVY
Sbjct: 111 EVY 113


>01_06_0556 +
           30207124-30207581,30207692-30207901,30208016-30208100,
           30208517-30208676,30208768-30208844,30208985-30209032,
           30209504-30209594,30209703-30210004,30210214-30210495,
           30210695-30211011,30211113-30211273,30211556-30211665,
           30211752-30211902,30212438-30212578,30212688-30212857,
           30213485-30213817,30213981-30214271,30214356-30214439,
           30214620-30214753,30214946-30215173,30215273-30215444,
           30215621-30215875,30215963-30216232
          Length = 1509

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +2

Query: 386 EQELEEKYYDTEK----IPVPLLVAKMSQLHLEVYTQLYTKLPFRQGQIYKGTNVY 541
           +++ E+ +  +EK    + VP  VAK  + H+    +    +PF +G+I+K   V+
Sbjct: 481 KKDQEQYWIQSEKPYRYVSVPEFVAKFKKFHMGKSLKKQLSVPFNKGKIHKSALVF 536


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 190 FTEPYSGSDKSPIF 149
           +TEPY+GS +SP+F
Sbjct: 47  YTEPYAGSSRSPVF 60


>01_06_1062 + 34186479-34186808
          Length = 109

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 457 RHLGHQQRXWYLLCVIILFLQFLLEXSQILL 365
           R    QQR W+++  I LFLQ  ++ S + L
Sbjct: 61  RAASRQQRSWHMISEIYLFLQLYVQMSTLRL 91


>12_02_0512 - 19889845-19890468,19890958-19891413,19891727-19892215
          Length = 522

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 355 LAVELVGNEPRKQSIFRKISLIIKVSVSQHHEPYRA 248
           L   L G   R++ IFR++    ++ + QH +P RA
Sbjct: 243 LVDRLTGFAARRERIFRQLDSFFEMVIEQHLDPNRA 278


>10_08_0448 +
           18015609-18016052,18017147-18017248,18017332-18017475,
           18017555-18017705,18017793-18017820,18018456-18018621,
           18018701-18018764,18019320-18019423,18019572-18019710,
           18020114-18020232,18020333-18020485,18020565-18020654,
           18020952-18021029,18021671-18021829,18021914-18022117,
           18022209-18022414,18022495-18022630,18022859-18022898,
           18023329-18023408,18023569-18024228
          Length = 1088

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 428 PVPLLVAKMSQLHL--EVYTQLYTKLPFRQGQIYK 526
           P+ + VA + Q ++  E+Y   YTKL FR GQI K
Sbjct: 798 PLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGK 832


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,016
Number of Sequences: 37544
Number of extensions: 230135
Number of successful extensions: 477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)