Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021372
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44368| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_20318| Best HMM Match : VPS9 (HMM E-Value=7.2)                      29   1.9  
SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)           27   7.5  
SB_45204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_44368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 28/80 (35%), Positives = 46/80 (57%)
 Frame = +2

Query: 254 IWFVMLANRDFNNETYFSENALLPGLVTNEFNGEYAAKQYLTXFEQELEEKYYDTEKIPV 433
           +W   L++  FNN TYFSENALLPG+V +++    AA        QEL +   D  K+P+
Sbjct: 10  VWMCALSDSQFNNRTYFSENALLPGMVNDDYYNHKAANS----LYQEL-KAIRDKTKVPL 64

Query: 434 PLLVAKMSQLHLEVYTQLYT 493
             + +K++   ++ Y Q ++
Sbjct: 65  KWISSKLADYGIQSYHQNFS 84


>SB_20318| Best HMM Match : VPS9 (HMM E-Value=7.2)
          Length = 230

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = -1

Query: 182 TVLWX*QKPHFLSLYLKFAINL*QNVYINSSWLFITHKSIYASYSLKEASF*LKILLNS 6
           +++W  Q+P F+S  +  A+N+ +N + N +  ++   S     ++ + S    +LLN+
Sbjct: 43  SIVWQQQQPSFISYAVHEAVNVWRNAHHNPADTYVPSPSTMVRAAIMDLSATADMLLNN 101


>SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)
          Length = 1075

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -2

Query: 454 HLGHQQRXWYLLCVIILFLQFLLEXSQILLCSILAVELVGNEPRKQSIFRKISLIIKVSV 275
           H+  ++  W LL   +  LQ +   +  L+C    V L GN       +  +SL+ K   
Sbjct: 636 HVEKRKTSWPLLFASVFSLQDVYSIALSLVCKTRTVLLEGNARLLGLCYSLVSLVCKTCT 695

Query: 274 SQHHE 260
             H E
Sbjct: 696 VLHVE 700


>SB_45204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 159 LLSXPEYGSVKWVRILK-KVHRPLCFLCYAVALYGS*CWLTETLIMRLIFL 308
           L+S P YG  +W R+   ++H  +C +   ++LY   C   E   +R + L
Sbjct: 72  LVSMPRYGEKRWGRLKNDRIHYSVCAVW--LSLYSVGCQSEEVCTVRAVCL 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,904,753
Number of Sequences: 59808
Number of extensions: 272675
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)