Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021372
(542 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036693-5|AAK29787.1| 434|Caenorhabditis elegans Hypothetical ... 31 0.71
Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical p... 28 3.8
AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein. 28 3.8
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 28 5.0
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 6.6
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 6.6
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 27 8.7
AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF036693-5|AAK29787.1| 434|Caenorhabditis elegans Hypothetical
protein C49A9.5 protein.
Length = 434
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 326 GLVTNEFNGEYAAKQYLTXFEQELEEKYYDTEKI 427
G+ N+ NG+ K+Y+ E+ LE K DT K+
Sbjct: 323 GIFVNQENGKCFCKEYIGEIERVLEGKVNDTNKV 356
>Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical protein
F55H2.6 protein.
Length = 1247
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = -2
Query: 367 LCSILAVELVGNE-------PRKQSIFRKISLIIKVSVSQHHEPYRATA 242
+C ++ V+LV + +K SIF + +I + +HHEP+ A A
Sbjct: 899 ICKVMGVQLVARDYQLDNSTAKKTSIFVEDDIINFFPIIKHHEPFTADA 947
>Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = -2
Query: 367 LCSILAVELVGNE-------PRKQSIFRKISLIIKVSVSQHHEPYRATA 242
+C ++ V+LV + +K SIF + +I + +HHEP+ A A
Sbjct: 899 ICKVMGVQLVARDYQLDNSTAKKTSIFVEDDIINFFPIIKHHEPFTADA 947
>AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein.
Length = 1247
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = -2
Query: 367 LCSILAVELVGNE-------PRKQSIFRKISLIIKVSVSQHHEPYRATA 242
+C ++ V+LV + +K SIF + +I + +HHEP+ A A
Sbjct: 899 ICKVMGVQLVARDYQLDNSTAKKTSIFVEDDIINFFPIIKHHEPFTADA 947
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 439 QRXWYL-LCVIILFLQFLLEXSQILLCSILAVELVGNEPRKQSIFRKISLIIKVS 278
+R W L +++ LQ L S ++ CS+ ++ N R++S F + S ++++
Sbjct: 171 ERMWLASLLLVLAALQSYL-FSSVIRCSLYLADIEDNRRRRESAFERCSERVRIA 224
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 449 WPPATXLVSSLCHN-TFPPVPARXQSNTALQHTRR*TRW*RAQEAEHFQKNKS 294
W PA+ S+ N + PP+ AR QSN+ T + + Q+ +H Q+ ++
Sbjct: 2267 WMPASFAPSARDPNRSQPPLFARSQSNSVANSTSTNIQQQQQQQIQHLQQQQA 2319
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 449 WPPATXLVSSLCHN-TFPPVPARXQSNTALQHTRR*TRW*RAQEAEHFQKNKS 294
W PA+ S+ N + PP+ AR QSN+ T + + Q+ +H Q+ ++
Sbjct: 2289 WMPASFAPSARDPNRSQPPLFARSQSNSVANSTSTNIQQQQQQQIQHLQQQQA 2341
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 449 WPPATXLVSSLCHN-TFPPVPARXQSNTALQHTRR*TRW*RAQEAEHFQKNKS 294
W PA+ S+ N + PP+ AR QSN+ T + + Q+ +H Q+ ++
Sbjct: 1110 WMPASFAPSARDPNRSQPPLFARSQSNSVANSTSTNIQQQQQQQIQHLQQQQA 1162
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 449 WPPATXLVSSLCHN-TFPPVPARXQSNTALQHTRR*TRW*RAQEAEHFQKNKS 294
W PA+ S+ N + PP+ AR QSN+ T + + Q+ +H Q+ ++
Sbjct: 1088 WMPASFAPSARDPNRSQPPLFARSQSNSVANSTSTNIQQQQQQQIQHLQQQQA 1140
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 449 WPPATXLVSSLCHN-TFPPVPARXQSNTALQHTRR*TRW*RAQEAEHFQKNKS 294
W PA+ S+ N + PP+ AR QSN+ T + + Q+ +H Q+ ++
Sbjct: 2267 WMPASFAPSARDPNRSQPPLFARSQSNSVANSTSTNIQQQQQQQIQHLQQQQA 2319
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 449 WPPATXLVSSLCHN-TFPPVPARXQSNTALQHTRR*TRW*RAQEAEHFQKNKS 294
W PA+ S+ N + PP+ AR QSN+ T + + Q+ +H Q+ ++
Sbjct: 2289 WMPASFAPSARDPNRSQPPLFARSQSNSVANSTSTNIQQQQQQQIQHLQQQQA 2341
>Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical
protein F54B8.12 protein.
Length = 279
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 427 YLLCVIILFLQFLLEXSQILLCSILAVELVGNEPRKQSIFRKIS 296
+++ + ILF QF+ + LL SIL + +G +P I+ +I+
Sbjct: 7 FIIALSILFSQFVFYFNLYLLYSILYSKRIGFKPELLIIYCRIA 50
>AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical
protein F33D11.9b protein.
Length = 676
Score = 27.1 bits (57), Expect = 8.7
Identities = 26/82 (31%), Positives = 36/82 (43%)
Frame = +2
Query: 296 TYFSENALLPGLVTNEFNGEYAAKQYLTXFEQELEEKYYDTEKIPVPLLVAKMSQLHLEV 475
T SE++L+PGLVT +F+ A Q F +L + E L+ S L LE
Sbjct: 67 TRISEHSLMPGLVTPKFDKSGIAIQLYRRF-SDLPKSKSQQE-----LIHTIFSDLGLEC 120
Query: 476 YTQLYTKLPFRQGQIYKGTNVY 541
+T + G G NVY
Sbjct: 121 FTHKWRSKV--AGNPMNGENVY 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,328,661
Number of Sequences: 27780
Number of extensions: 216346
Number of successful extensions: 545
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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