Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021372
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.66 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 281 DFNNETYFSENALLPGLVTNEFNGEYAAKQYLTXFEQELEEKYYDTEKIPVP 436
           D     YF   +L   L    FN +   K YL  F     +K+Y+   + +P
Sbjct: 275 DLAPSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLP 326


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 353 EYAAKQYLTXFEQELEEKYYDTEKIP 430
           ++A  +Y   F++  EEK ++  +IP
Sbjct: 253 KHACAEYRRNFKKMQEEKIFEPHRIP 278


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 461 AETSWPPATXLVSSLCHNTFPPVPARXQSNTALQH 357
           A +S+P A  +  +  H+  PP     Q  T LQ+
Sbjct: 449 AHSSYPAAIQIGHTPHHHPHPPETPGPQVETILQN 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,718
Number of Sequences: 438
Number of extensions: 2939
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)