Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021372
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54280.1 68418.m06761 myosin heavy chain, putative similar to...    31   0.66 
At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ...    28   4.6  
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    27   8.1  
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro...    27   8.1  
At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   8.1  

>At5g54280.1 68418.m06761 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499045|emb|CAA84065
          Length = 1030

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 395 LEEKYYDTEKIPVPLLVAKMSQLHLEVYTQLYTKLPFRQGQI 520
           L +K    + + V + V K   +H E+Y   YTKL  R GQI
Sbjct: 640 LSDKKVAQDPLSVSIAVLKQYDVHPEMYQVGYTKLYLRTGQI 681


>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
           family / APC10 family contains Pfam PF03256:
           Anaphase-promoting complex, subunit 10 (APC10) domain;
           similar to anaphase promoting complex subunit APC10
           (GI:6463666) [Homo sapiens]
          Length = 192

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 278 RDFNNETYFSENALLPGLVTNEFNGEYAAKQYLTXFEQELEEKY 409
           RD N ETY+  + L P L+  +F  +   +  +   + +L+E Y
Sbjct: 51  RDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYVDFKLDESY 94


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
           [Arabidopsis thaliana] GI:6491702; similar to myosin
           GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
           profiles: PF00063: myosin head (motor domain), PF00612:
           IQ calmodulin-binding motif; identical to cDNA myosin
           (ATM) GI:297068
          Length = 1166

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 395 LEEKYYDTEKIPVPLLVAKMSQLHLEVYTQLYTKLPFRQGQI 520
           L E   D + + V + +     +  E+Y   YTKL FR GQI
Sbjct: 788 LVENIADRDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQI 829


>At1g50360.1 68414.m05645 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1153

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 422 KIPVPLLVAKMSQLHL--EVYTQLYTKLPFRQGQI 520
           K P+ + VA + Q ++  E+Y   YTKL FR GQI
Sbjct: 787 KDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQI 821


>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Gallus gallus [GI:212530], Rattus
           norvegicus [GI:474940], Mus musculus [SP|Q60715];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 287

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 463 KLRHLGHQQRXWYLLCVIILFLQFLLEXSQILLCSILAVELVGNEPRKQSI 311
           KLRH   Q R W  L +++LF+ F+L    ++L +     L  N      I
Sbjct: 3   KLRHSRFQARKWSTL-MLVLFMLFMLTIVLLMLLAFGVFSLPINNDESSPI 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,251
Number of Sequences: 28952
Number of extensions: 197232
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)