Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021370
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.10 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   2.9  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   2.9  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   2.9  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   6.7  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.7  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   8.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 181 VRVHRADTGRSSNELDRQTTELERRNXA 264
           +R H+   GR+  ELDR+ T+L++R  A
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERA 45


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 250 VPTQSFVDPIHLKICQYPHGGL 185
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 105 YVARSESIMRDSDVAFSHSAALAIAQVRRNG 13
           Y    ES + D+ +  SH+ A +I Q  R+G
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSG 93


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 146 LTLHLRHANIREXESTVRILADLQMN-WIDKRLSWNAGXGLQHLAG 280
           +TLH       E    V     LQ N W+D   S+NAG G+++ +G
Sbjct: 252 VTLHTGDGCEMEDIKRVMTGTALQTNCWVDAPNSYNAGCGVENPSG 297


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 111 RSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNLVP 1
           RS  + SE+++    V FS SAA   A ++ N  ++P
Sbjct: 118 RSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIP 154


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -2

Query: 443 ANC--LTHRNWSANVQALYPGDGAVIRYTGAESV 348
           +NC  +T+  WS NV     G   +  YT   SV
Sbjct: 293 SNCSSITNEQWSYNVGVYLAGTAFLYNYTNGSSV 326


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 419 WSANVQALYPGDGAVIRYTGAESVVPGGGCS 327
           W A + A    DGAV  Y      V GGG S
Sbjct: 135 WQAGISACAVCDGAVPIYRNKPLAVVGGGDS 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,562
Number of Sequences: 5004
Number of extensions: 36886
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)