Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021370
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406... 29 1.7
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 2.2
05_03_0179 - 9257066-9258946 29 2.2
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 2.2
01_06_1147 + 34892415-34893702,34894051-34894676 29 2.9
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 28 3.8
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 5.1
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 5.1
06_01_0500 + 3584743-3585516 27 6.7
04_04_0343 - 24526223-24527009,24527216-24527340,24527763-245282... 27 6.7
03_02_0111 + 5688649-5688942 27 6.7
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 27 6.7
07_03_1158 - 24424060-24424461 27 8.8
06_02_0063 + 11052916-11053106,11054865-11054945,11055314-110553... 27 8.8
04_01_0404 - 5297341-5297970,5298304-5299179 27 8.8
01_06_0328 + 28507942-28508610,28509669-28510826 27 8.8
>11_01_0519 +
4066776-4066892,4067042-4067099,4067322-4067608,
4067706-4067822,4067898-4067958,4068042-4068133,
4068547-4068632,4068926-4068975,4069077-4069117,
4069222-4069392,4069875-4069942,4070088-4070148,
4070471-4070757,4072008-4072172,4072759-4072760,
4072829-4073139,4073600-4073787,4075231-4075482,
4076035-4076114,4076199-4076399,4076959-4077014,
4077137-4077328
Length = 980
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 368 YTGAESVVPGGGCSRV*QYHXRPXQAFRGHQPSAAAXFLRSNSVVCRSNSFEDLPVSA 195
+TG + V GCSR+ R GH P AAA R + + +LP++A
Sbjct: 519 FTGGDRVAVWDGCSRL----LRAEVGCCGHSPGAAAAAARVVKAIANPDPAVELPLTA 572
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 196 HGGLXLTNVSMSQMQGQVDYDFGVGGRLPI 107
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>05_03_0179 - 9257066-9258946
Length = 626
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 387 RRSRY*IHGRGERSPRRWLQPRLAVPXQASTSVPRTPAKCCSPIPAFQLSR 235
+++R HGR L+ + A P +VP TP KC +P+P+ +++
Sbjct: 120 KKARGATHGRNIYDGGCLLEAQHAQPCSKDGAVP-TPTKCSTPVPSCAITK 169
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 29.1 bits (62), Expect = 2.2
Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 8/124 (6%)
Frame = -1
Query: 369 IHGRGERSPRRWLQPR--------LAVPXQASTSVPRTPAKCCSPIPAFQLSRLSIQFI* 214
IHG+G RRW P A+ + A SPIP F + +
Sbjct: 410 IHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAMAISPIPGFTGRGGAEASLR 469
Query: 213 RSASIRTVDSXSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAI 34
RS + S LA + C SG S S+ + R + +A + AAL +
Sbjct: 470 RSLAAACASMDSSSLARILC--------SSGSSSSSHATLAARHFRPALLAAAEPAALVV 521
Query: 33 AQVR 22
VR
Sbjct: 522 RAVR 525
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 283 PRNACXGLXWYC*TRLQPPPGTTLSAPVYLITAPSPG 393
P N+ G + C LQP PGT S P T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 211 SSNELDRQTTELERRNXAAALGWC 282
SS+E+D +TTEL R+ AL WC
Sbjct: 530 SSSEIDGETTELVRKMVVVAL-WC 552
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 68 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIREXESTVRILADLQMN 223
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 363 GRGERSPRRWLQPRLAVPXQASTSVPRTP 277
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>06_01_0500 + 3584743-3585516
Length = 257
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 366 HGRGERSPRRWLQPRLAVPXQASTSVPRT-PAKCCSPIPAFQLSR 235
H R +PRR + P LA ++S S P T PA + +P +R
Sbjct: 28 HRRARAAPRRCIPP-LASDSESSASSPTTSPAAAAAALPGIAQAR 71
>04_04_0343 -
24526223-24527009,24527216-24527340,24527763-24528203,
24528536-24528637
Length = 484
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 104 YDRESPPDSKIVVNLTLHLRHANIREXESTVRILADLQMNWIDKRLSWNAGXGLQHLAGV 283
+ + P S + N L+ AN S ++ + + WI+K L W+ G L L +
Sbjct: 99 FSNDDPEASHLRSNFLSWLKSAN-----SLGALIGLVFLVWIEKNLGWDIGFLLCALIVI 153
Query: 284 LGTLVEA 304
+G L+ A
Sbjct: 154 VGLLIAA 160
>03_02_0111 + 5688649-5688942
Length = 97
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 262 AAALGWCPRNACXGLXWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 408
AAA P G + + PPP L+ P+Y + AP SA+T
Sbjct: 35 AAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 126 SGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNLV 4
S GD + + I + SDV SHSA + V NG V
Sbjct: 339 SFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNGTSV 379
>07_03_1158 - 24424060-24424461
Length = 133
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 327 PRLAVPXQASTSVPRTPAKCCSPIPAFQL 241
P LAVP VP P P+P F+L
Sbjct: 90 PHLAVPELPKPEVPEIPKAELPPLPKFEL 118
>06_02_0063 +
11052916-11053106,11054865-11054945,11055314-11055362,
11055468-11055576,11056356-11056408,11056555-11056617,
11057398-11057745
Length = 297
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 327 PRLAVPXQASTSVPRTPAKCCSPIPAFQLSRL 232
P+LA+ + + V T KC P PA +S L
Sbjct: 174 PKLALALEKNLLVTSTMTKCTDPYPAAHVSNL 205
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 99 ARSESIMRDSDVAFSHSAALAIAQVRRNGNL 7
A ++ ++RD DV F+ +L ++++ GNL
Sbjct: 86 AAAQEVLRDKDVTFASRPSLLVSEIFCYGNL 116
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 211 SSNELDRQTTELERRNXAAALGWC 282
+S+E+D +TTEL R+ AL WC
Sbjct: 551 NSSEIDGETTELVRKMVVVAL-WC 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,619,664
Number of Sequences: 37544
Number of extensions: 307990
Number of successful extensions: 913
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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