Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021370
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      30   0.97 
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             28   3.9  
SB_14327| Best HMM Match : NHL (HMM E-Value=0)                         27   6.9  
SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)              27   9.1  

>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 333 LQPRLAVPXQASTSVPRTPAKCCSPIPAFQLSR 235
           +QP  A P Q S+SV  + A  C   PAF  SR
Sbjct: 246 IQPSSATPIQVSSSVTTSDAVICRARPAFVYSR 278


>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 184 RVHRADTGRSSNELDRQTTELERRNXAAALGWCP 285
           R++  + G S   L + TT+ ++R+ A+AL  CP
Sbjct: 604 RINNENKGESGTALTKVTTDWDQRDAASALPQCP 637


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 181 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 77
           L+++S    +G VD  FGV  +   +R  +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628


>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 305 RPXQAFRGHQPSAAAXFLRSNSVVCRSNSFEDLPVSAR-WTRT--HEC*HVSNAGSG*LR 135
           R  Q  R H+PS+     RS S V RS S    P+  R W+R+  H   H S + S    
Sbjct: 324 RALQRSRQHKPSSRNTS-RSRSPV-RSRS----PIHPRSWSRSVSHSLSHSSASRSPTPE 377

Query: 134 FWSRGETPDRTLRGASRS 81
            W R  TP R+    SRS
Sbjct: 378 DWDRSRTPSRSPTPDSRS 395


>SB_14327| Best HMM Match : NHL (HMM E-Value=0)
          Length = 725

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 504 SISSLLCILEPNLNAVCMSLGQL 436
           S+ S  C++ PN   VC+S G L
Sbjct: 101 SVDSSFCMMHPNKRHVCLSYGDL 123


>SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)
          Length = 334

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 291 VPRTPAKCCSPIPAFQLSRLSIQFI*RSASIRTVDSXSRMLACLKC 154
           VPR  A  C P+  F ++R  +  + R+ S   + S  ++   LKC
Sbjct: 263 VPRERAYPCRPLDYFGINRWELDGMRRTCSNDDITSPRKVKDALKC 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,480
Number of Sequences: 59808
Number of extensions: 320899
Number of successful extensions: 814
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)