Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021370
(513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 33 0.77
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 30 5.5
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 30 5.5
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 30 5.5
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 30 5.5
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 30 5.5
S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2 sub... 29 7.2
S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2 sub... 29 7.2
S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A... 29 7.2
BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein. 29 7.2
BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein. 29 7.2
BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein. 29 7.2
AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein. 29 7.2
X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor de... 29 9.5
M59216-1|AAA35862.1| 474|Homo sapiens gamma-aminobutyric acid r... 29 9.5
BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor, n... 29 9.5
BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor, n... 29 9.5
BC022449-1|AAH22449.1| 474|Homo sapiens gamma-aminobutyric acid... 29 9.5
AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein. 29 9.5
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 32.7 bits (71), Expect = 0.77
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +2
Query: 2 GTRLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKI--VVNLTLHLRHANI 175
G + P LL +A + ++ L+ YD P + VVN++L L N+
Sbjct: 3 GGQGPLLLLLLLAVCLGAQGRNQEERLLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNL 62
Query: 176 ---REXESTVRILADLQMNWIDKRLSWN 250
E E + ++M W D RL W+
Sbjct: 63 ISLNEREEALTTNVWIEMQWCDYRLRWD 90
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 29.9 bits (64), Expect = 5.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 14 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIR 178
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 179 EXESTVRILADLQMNWIDKRLSWN 250
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 29.9 bits (64), Expect = 5.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 14 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIR 178
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 179 EXESTVRILADLQMNWIDKRLSWN 250
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 29.9 bits (64), Expect = 5.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 14 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIR 178
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 179 EXESTVRILADLQMNWIDKRLSWN 250
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 29.9 bits (64), Expect = 5.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 14 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIR 178
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 179 EXESTVRILADLQMNWIDKRLSWN 250
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 29.9 bits (64), Expect = 5.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 14 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIR 178
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 179 EXESTVRILADLQMNWIDKRLSWN 250
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 474
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHLRHAN-I 175
F L A A + +++SL+ +D LL YD PD + V + + + + +
Sbjct: 15 FPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMV 74
Query: 176 REXESTVRILADLQMNWIDKRLSWN 250
E + Q W DKRLS+N
Sbjct: 75 SEVNMDYTLTMYFQQAWRDKRLSYN 99
>S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 512
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHLRHAN-I 175
F L A A + +++SL+ +D LL YD PD + V + + + + +
Sbjct: 15 FPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMV 74
Query: 176 REXESTVRILADLQMNWIDKRLSWN 250
E + Q W DKRLS+N
Sbjct: 75 SEVNMDYTLTMYFQQAWRDKRLSYN 99
>S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A
receptor beta 2 subunit protein.
Length = 474
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHLRHAN-I 175
F L A A + +++SL+ +D LL YD PD + V + + + + +
Sbjct: 15 FPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMV 74
Query: 176 REXESTVRILADLQMNWIDKRLSWN 250
E + Q W DKRLS+N
Sbjct: 75 SEVNMDYTLTMYFQQAWRDKRLSYN 99
>BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHLRHAN-I 175
F L A A + +++SL+ +D LL YD PD + V + + + + +
Sbjct: 15 FPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMV 74
Query: 176 REXESTVRILADLQMNWIDKRLSWN 250
E + Q W DKRLS+N
Sbjct: 75 SEVNMDYTLTMYFQQAWRDKRLSYN 99
>BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHLRHAN-I 175
F L A A + +++SL+ +D LL YD PD + V + + + + +
Sbjct: 15 FPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMV 74
Query: 176 REXESTVRILADLQMNWIDKRLSWN 250
E + Q W DKRLS+N
Sbjct: 75 SEVNMDYTLTMYFQQAWRDKRLSYN 99
>BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHLRHAN-I 175
F L A A + +++SL+ +D LL YD PD + V + + + + +
Sbjct: 15 FPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMV 74
Query: 176 REXESTVRILADLQMNWIDKRLSWN 250
E + Q W DKRLS+N
Sbjct: 75 SEVNMDYTLTMYFQQAWRDKRLSYN 99
>AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein.
Length = 1383
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 366 HGRGERSPRRWLQPRLAVPXQASTSVPRTPAKCCSPIP 253
HG + SP W Q + + P + P P +CCS P
Sbjct: 256 HGGRDCSPTCWEQGKCSGPAEQEKRGPSFPKECCSQGP 293
>X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor delta
subunit protein.
Length = 517
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 104 YDRESPP----DSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWNA 253
Y++E P + + V L L L + +++E E T+ ++ W D RL WNA
Sbjct: 38 YNKELRPVAHKEESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNA 92
>M59216-1|AAA35862.1| 474|Homo sapiens gamma-aminobutyric acid
receptor beta-1 subunit protein.
Length = 474
Score = 29.1 bits (62), Expect = 9.5
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 23 LTCAIASAAECENATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IREXES 190
+ C S E N + + +D LL YD PD + V + + + + + E
Sbjct: 21 MVCCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNM 80
Query: 191 TVRILADLQMNWIDKRLSWN 250
+ Q +W DKRLS++
Sbjct: 81 DYTLTMYFQQSWKDKRLSYS 100
>BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 104 YDRESPP----DSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWNA 253
Y++E P + + V L L L + +++E E T+ ++ W D RL WNA
Sbjct: 38 YNKELRPVAHKEESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNA 92
>BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 104 YDRESPP----DSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWNA 253
Y++E P + + V L L L + +++E E T+ ++ W D RL WNA
Sbjct: 38 YNKELRPVAHKEESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNA 92
>BC022449-1|AAH22449.1| 474|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, beta 1 protein.
Length = 474
Score = 29.1 bits (62), Expect = 9.5
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 23 LTCAIASAAECENATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IREXES 190
+ C S E N + + +D LL YD PD + V + + + + + E
Sbjct: 21 MVCCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNM 80
Query: 191 TVRILADLQMNWIDKRLSWN 250
+ Q +W DKRLS++
Sbjct: 81 DYTLTMYFQQSWKDKRLSYS 100
>AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein.
Length = 517
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 104 YDRESPP----DSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWNA 253
Y++E P + + V L L L + +++E E T+ ++ W D RL WNA
Sbjct: 38 YNKELRPVAHKEESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNA 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,880,261
Number of Sequences: 237096
Number of extensions: 1559132
Number of successful extensions: 3876
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3875
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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