Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021370
         (513 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4314|AAF56853.1| 2977|Drosophila melanogaster CG11873-P...    32   0.52 
X78349-1|CAA55144.1|  686|Drosophila melanogaster Grd protein.         31   0.69 
AE014296-2969|AAF49298.2|  686|Drosophila melanogaster CG7446-PA...    31   0.69 

>AE014297-4314|AAF56853.1| 2977|Drosophila melanogaster CG11873-PA
            protein.
          Length = 2977

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = -1

Query: 333  LQPRLAVPXQASTSVPRTPAKCCSPIPAFQLSRLSIQFI*RSASIRTVDSXSRMLACLKC 154
            LQP+L  P     S+P  P    SP PA QL+    Q   R  ++  +D  ++ L CL  
Sbjct: 1391 LQPQLQ-PVTVPVSLPTQPVPIPSPAPAPQLANNGQQ---RYIALPPIDPTTQQLFCLNS 1446

Query: 153  RVRLTTILESGGDSRS 106
                 T + +G  + S
Sbjct: 1447 VTNQITAMSAGQTAAS 1462


>X78349-1|CAA55144.1|  686|Drosophila melanogaster Grd protein.
          Length = 686

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +2

Query: 50  ECENATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IREXESTVRILADLQ 217
           +  N  ++S ++D+LL  YD    PD       + + + +R    I E + T  +    +
Sbjct: 102 QSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFR 161

Query: 218 MNWIDKRLSW 247
            +W+DKRL++
Sbjct: 162 QSWVDKRLAF 171


>AE014296-2969|AAF49298.2|  686|Drosophila melanogaster CG7446-PA
           protein.
          Length = 686

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +2

Query: 50  ECENATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IREXESTVRILADLQ 217
           +  N  ++S ++D+LL  YD    PD       + + + +R    I E + T  +    +
Sbjct: 102 QSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFR 161

Query: 218 MNWIDKRLSW 247
            +W+DKRL++
Sbjct: 162 QSWVDKRLAF 171


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,757,765
Number of Sequences: 53049
Number of extensions: 482530
Number of successful extensions: 1120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)