Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021370
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 39 0.002
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 38 0.006
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.006
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.006
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.006
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 38 0.006
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 36 0.013
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.091
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.12
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.12
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 33 0.12
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.12
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.16
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.21
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.21
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 32 0.21
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 32 0.28
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 30 0.85
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 29 2.0
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 28 3.4
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 28 4.5
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 27 6.0
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 27 6.0
AF047653-1|AAC04458.2| 272|Caenorhabditis elegans Hypothetical ... 27 6.0
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 27 6.0
AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical ... 27 7.9
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 23 LTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIREXESTVR 199
+T +A +E +S S + LL +++ SPPD ++ ++ + L H I E ++
Sbjct: 55 VTVGVAEFSEQYQGSS-SRLTRHLLEKHNKCSPPDGRVDISHNIELVHIIGINELNQNMQ 113
Query: 200 ILADLQMNWIDKRLSWNAG--XGLQH 271
+L + W D LSW G++H
Sbjct: 114 VLVYIVQQWTDASLSWKVEEFRGIKH 139
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWN 250
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWN 250
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWN 250
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWN 250
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWN 250
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLSWN 250
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 104 YDRESPPDSKIVVNLTLHLRHANIREXESTVRILADLQMNWIDKRLSWNA 253
YD E+P + L +L+ ++E + + ++ ++ W D RLSWNA
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 83 IDSLLATYDRESP----PDSKIVVNLTL---HLRHANIREXESTVRILADLQMNWIDKRL 241
+ + A +D P PD+ N TL +L+ + E E V ++ +L W D RL
Sbjct: 50 VSPVYAWFDTSKPLGYDPDAPQRYNYTLFLYNLKLIQVNEPEEQVSVVLELMEYWYDPRL 109
Query: 242 SWNA 253
SWNA
Sbjct: 110 SWNA 113
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.091
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 146 LTLHLRHANIREXESTVRILADLQMNWIDKRLSWNA 253
L +L+ ++E E V ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 20 LLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIREX 184
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 185 ESTVRILADLQMNWIDKRLSWN 250
+ + L+ WID++LSW+
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWD 91
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 20 LLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIREX 184
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 185 ESTVRILADLQMNWIDKRLSWN 250
+ + L+ WID++LSW+
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWD 91
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 20 LLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIREX 184
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 185 ESTVRILADLQMNWIDKRLSWN 250
+ + L+ WID++LSW+
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWD 91
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 80 MIDSLLATYDRESPP--DSK--IVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLS 244
+I+ L++ Y RE P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 245 W 247
W
Sbjct: 85 W 85
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 119 PPDSKIVVNLTLHLRHANIREXESTVRILADLQMNWIDKRLSWNAG--XGLQHL 274
PP +I + L++ ++ + E E L D + +W D RLSW+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.21
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 137 VVNLTLHLRHANIREXESTVRILADLQMNWIDKRLSWN 250
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.21
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 137 VVNLTLHLRHANIREXESTVRILADLQMNWIDKRLSWN 250
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 32.3 bits (70), Expect = 0.21
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +2
Query: 44 AAECENATSL----SLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA-NIREXESTVRI 202
A CEN +L S +++ + YDR P ++VN+T+ L ++E +
Sbjct: 57 ALNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAY 116
Query: 203 LADLQMNWIDKRLSWN 250
+ W D RLSW+
Sbjct: 117 VISHTQRWYDGRLSWD 132
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 119 PPDSKIVVNLTLHLRHANIREXESTVRILADLQMNWIDKRLSWN 250
PP +++ + + + L+ ++ E E V L D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 146 LTLHLRHANIREXESTVRILADLQMNWIDKRLSWN 250
L +L+ ++E V ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 104 YDRESPPDSKIVVNLTLHLRHANIREXESTVRILADLQMNWIDKRLSWNA 253
YD ++P + L L+ + E V ++ ++ W D RLSWNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 30.3 bits (65), Expect = 0.85
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHL-RHANIRE 181
FLL I +S ++++LL Y++ P + V +L R ++ E
Sbjct: 11 FLLVIFILHIVTINANKHVSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDE 70
Query: 182 XESTVRILADLQMNWIDKRLSWN 250
+ L+M W DK+L+WN
Sbjct: 71 VNQVLTTSLWLEMQWYDKKLTWN 93
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/70 (18%), Positives = 29/70 (41%)
Frame = +2
Query: 41 SAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIREXESTVRILADLQM 220
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 221 NWIDKRLSWN 250
+W D +SW+
Sbjct: 114 SWNDTMVSWD 123
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 56 ENATSLS-LMIDSLLATYDRESPPDSKIVVNLT-LHLRHANIREXESTVRILADLQMNWI 229
E+A L+ L I +A+ + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 230 DKRLSWN 250
D RL WN
Sbjct: 93 DDRLMWN 99
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 17 FLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA-NIRE 181
F L + + E + T + D L+ YD P + +++N++++ +
Sbjct: 10 FYLAISWCNLLEVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTLDP 69
Query: 182 XESTVRILADLQMNWIDKRLSWN 250
E T+ ++ + W D+ L WN
Sbjct: 70 AEETINFSSEFILQWKDEFLFWN 92
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 146 LTLHLRHANIREXESTVRILADLQMNWIDKRLSWN 250
L L+ + E + V ++ ++ W D RL+WN
Sbjct: 78 LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 152 LHLRHAN-IREXESTVRILADLQMNWIDKRLSWN 250
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 140 VNLTLHLRHAN-IREXESTVRILADLQMNWIDKRLSWNA 253
VN+ L + H + E E T + + WID+ + W+A
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDA 92
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 212 LQMNWIDKRLSWN 250
L +NW+D RLSWN
Sbjct: 165 LNINWMDPRLSWN 177
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 50 ECENATSLSLMIDSLLATYDRESPPDSK-IVVNLTLHLRH-ANIREXESTVRILADLQMN 223
E + +L +ID+LL YD P+++ + V + LH++ + I E +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAEGVNVTIELHVQGVSGISEITGDFSLDVMYSEI 68
Query: 224 WIDKRLSW 247
W D RLS+
Sbjct: 69 WQDPRLSF 76
>AF047653-1|AAC04458.2| 272|Caenorhabditis elegans Hypothetical
protein W02F12.2 protein.
Length = 272
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 504 SISSLLCILEPNLNAVCMSL 445
++ S LC LEPNLNA+ + L
Sbjct: 136 ALVSGLCFLEPNLNAIALML 155
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 170 NIREXESTVRILADLQMNWIDKRLSWN 250
++ E + + + L +W+D RLSWN
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWN 70
>AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical
protein C04C3.2 protein.
Length = 464
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 80 MIDSLLATYDRESPPDSK----IVVNLTLHLRH-ANIREXESTVRILADLQMNWIDKRLS 244
+I+++ YD+ P ++ ++V++T+ L +RE + + W D +L+
Sbjct: 44 LIETIQRRYDKRVRPFAESNRPVIVHMTIVLGILTEVRENQQVASFVISHVQKWRDPKLA 103
Query: 245 WN 250
WN
Sbjct: 104 WN 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,319
Number of Sequences: 27780
Number of extensions: 228095
Number of successful extensions: 720
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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