Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021370
(513 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.002
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 27 0.11
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 26 0.26
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.9
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 21 7.5
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 9.9
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 9.9
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 9.9
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 9.9
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 9.9
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.9 bits (74), Expect = 0.001
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 53 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIREXESTVRILADLQ 217
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 218 MNWIDKRLSWNA 253
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.1 bits (72), Expect = 0.002
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 59 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IREXESTVRILADLQMNW 226
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 227 IDKRLSWNAG 256
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.1 bits (57), Expect = 0.11
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 59 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIREXESTVRILADLQMNW 226
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 227 IDKRLSWNAGXGLQHLA 277
D RL++ G++ L+
Sbjct: 68 TDPRLAFKKRTGVETLS 84
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.8 bits (54), Expect = 0.26
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 59 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIREXESTVRILADLQMNW 226
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 227 IDKRLSWNAGXGLQHLA 277
D RL++ G++ L+
Sbjct: 68 TDPRLAFKKRTGVETLS 84
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.4
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 80 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLS 244
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 245 WN 250
WN
Sbjct: 118 WN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.4
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 80 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIREXESTVRILADLQMNWIDKRLS 244
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 245 WN 250
WN
Sbjct: 118 WN 119
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 170 NIREXESTVRILADLQMNWIDKRLSWN 250
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 170 NIREXESTVRILADLQMNWIDKRLSWN 250
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 170 NIREXESTVRILADLQMNWIDKRLSWN 250
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 170 NIREXESTVRILADLQMNWIDKRLSWN 250
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 170 NIREXESTVRILADLQMNWIDKRLSWN 250
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 170 NIREXESTVRILADLQMNWIDKRLSWN 250
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 21.0 bits (42), Expect = 7.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 97 RNVRSGVSPRLQNRS 141
R R +SPR++NRS
Sbjct: 729 RQHRDSLSPRVENRS 743
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 20.6 bits (41), Expect = 9.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 422 FYALDNWPNDMQT 460
FY +DNW D+ +
Sbjct: 540 FYEIDNWMLDLNS 552
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 20.6 bits (41), Expect = 9.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 422 FYALDNWPNDMQT 460
FY +DNW D+ +
Sbjct: 540 FYEIDNWMLDLNS 552
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 9.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 351 ALRARVSNNGSVSWIK 398
ALR N G ++W K
Sbjct: 240 ALRCLAHNGGEIAWTK 255
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 9.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 351 ALRARVSNNGSVSWIK 398
ALR N G ++W K
Sbjct: 240 ALRCLAHNGGEIAWTK 255
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 9.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 351 ALRARVSNNGSVSWIK 398
ALR N G ++W K
Sbjct: 240 ALRCLAHNGGEIAWTK 255
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,041
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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