Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021369
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.79 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.2  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   5.5  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.7  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   9.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 675 VNREEIYEARNQIGFRQVKQS 613
           +NREEI    N +GF +VK++
Sbjct: 611 LNREEIKRLDNGVGFLKVKEN 631


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 253 QIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEY 426
           ++F+N +L +ENV+       Y      S  Y   G +L  + +V    P +IL F++
Sbjct: 558 KVFINGTLIIENVERASDQATYDCVAKNSQGYSARG-SLEVQVMV----PPQILPFDF 610


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  RIVKILFHKFASGTVLNKNSACSDVL 107
           R+V+I+  KF+S  +  K S C  V+
Sbjct: 196 RMVQIIHKKFSSIQMQLKQSTCEAVM 221


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 204 RVRHSFSLQTSILN 163
           ++RH F L+T +LN
Sbjct: 273 KLRHKFDLKTLVLN 286


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -1

Query: 312 HIKTVKFNIF*MQRSV 265
           +++TVKFN+F + ++V
Sbjct: 189 NVETVKFNLFLLSQAV 204


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 491 STLSKFPYNVSNQRPLTGNEGSYSNSNI 408
           S+  + P +  NQ+ L  N    SN N+
Sbjct: 101 SSTPESPEHYYNQKTLQANNNDASNGNL 128


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 430 PSFPVRGLWFDTLYGNLLKVD 492
           P FP RG+  DT   N   VD
Sbjct: 214 PKFPYRGVMIDTA-RNFFPVD 233


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 529 EFLKHSQVYELYPNKFLTLDESRVYVLNTLFNLPETYLIACLIDFFT 669
           E LK+++V      K L  +  R+Y L+ L +   +Y+I  ++ F T
Sbjct: 128 EMLKNARVKNTALWKQLRYEHYRLYQLSVLIDNNMSYII--IVSFAT 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,263
Number of Sequences: 336
Number of extensions: 3868
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)