Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021369
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   7.9  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   7.9  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.9  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = -3

Query: 247 NTTIVFLG-HNIFILKSQALVFLTNIHFKFRIKN--YVKSLIIVY 122
           N+    LG H ++I+K   L  +T+IH   RIK+  +V++ +++Y
Sbjct: 507 NSQAALLGKHYVYIVKKN-LELITSIHETIRIKSAVWVENNVLLY 550


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -1

Query: 345 LWRFVFGQCIVHIKTVKFNIF*MQRSVNENLC 250
           +WR   G+C+ H++     I+ +      N+C
Sbjct: 531 IWRVSTGECLYHLRGHSLRIYSVLYEPERNIC 562


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 107 INFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNI 220
           + FLK N +   NII  +  K D   E   LTL++ NI
Sbjct: 233 LEFLKTNMWAYANIISTACVKDDESCEKIRLTLENTNI 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,871
Number of Sequences: 5004
Number of extensions: 63952
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)