Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021369
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 112 3e-25
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 98 5e-21
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 95 4e-20
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 57 1e-08
05_07_0284 - 28943527-28943625,28944417-28944785 30 1.5
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 29 3.5
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 28 6.2
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 28 8.2
08_02_0890 + 22309061-22309086,22309172-22309253,22309349-223094... 28 8.2
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 112 bits (269), Expect = 3e-25
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Frame = +1
Query: 253 QIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYD 429
+IF NRSL++ N+ GFDMDYTLA+YK +E L ++ T E+LV GYP E+L +++D
Sbjct: 82 EIFCNRSLNMRNITAVGFDMDYTLAQYKPETFEALAYHGTIEKLVKDLGYPEELLTWQFD 141
Query: 430 PSFPVRGLWFDTLYGNLLKVDAYGNI*CVYMGFEFLKHSQVYELYPNKFL--TLDESRVY 603
+ VRGL D GN+LK+D + + Y GF + + Y + + + DE
Sbjct: 142 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVSAYGSTLIRDSFDEPDYA 201
Query: 604 VLNTLFNLPETYLIACLIDFFTIHP 678
+++TLF+L E YL A L+DF +P
Sbjct: 202 LIDTLFSLGEAYLFAQLVDFMDNNP 226
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 98.3 bits (234), Expect = 5e-21
Identities = 51/142 (35%), Positives = 81/142 (57%)
Frame = +1
Query: 253 QIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDP 432
QIF +R++++E++K GF M+YTL YK +E L + K+RLV YP +ILE+ Y+
Sbjct: 381 QIFCSRTVNMEDIKAIGFKMEYTLINYKVT-FENLAYVEAKKRLVNGKYPEKILEWNYNS 439
Query: 433 SFPVRGLWFDTLYGNLLKVDAYGNI*CVYMGFEFLKHSQVYELYPNKFLTLDESRVYVLN 612
+RGL D GN++KVD Y N+ Y G + + + +Y + F+ +E ++
Sbjct: 440 EHMIRGLIIDKKKGNIIKVDHYNNVKMSYHGMNEMPYEESKNVYGSTFM-FEEPEFAAMD 498
Query: 613 TLFNLPETYLIACLIDFFTIHP 678
T F+ E YL A L+D +P
Sbjct: 499 TTFSCCEGYLFAQLVDLMDTNP 520
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 95.5 bits (227), Expect = 4e-20
Identities = 54/141 (38%), Positives = 87/141 (61%), Gaps = 4/141 (2%)
Frame = +1
Query: 256 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYDP 432
I+VN+++ L++++ YGFD DYTL+ Y S + L ++L K+ LV + YP L++EYD
Sbjct: 81 IYVNKNVKLDDLQVYGFDYDYTLSHY-SEHLQCLIYDLAKKHLVNELKYPESCLKYEYDH 139
Query: 433 SFPVRGLWFDTLYGNLLKVDAYGNI--*CVYMGFEFLKHSQVYELYPNKFLTLDESRVYV 606
FP+RGL++D L G LLK+D +G+I + G L S++ ELY + + D++R V
Sbjct: 140 GFPIRGLYYDRLKGCLLKLDFFGSIEPDGCFFGRHKLSLSEIKELYGTRHIGRDQARQLV 199
Query: 607 -LNTLFNLPETYLIACLIDFF 666
L +F E L+A ++ F
Sbjct: 200 GLMDVFCFSEACLLADIVQHF 220
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 57.2 bits (132), Expect = 1e-08
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 394 GYPREILEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNI*CVYMGFEFLKHSQVYELYPNK 573
G+P + LEF DP +RGL D GNL+K D +G I G + L S V E+Y +
Sbjct: 51 GFPVDDLEF--DPDLVIRGLIMDKDKGNLVKADRFGYIKRAMHGTQMLSTSAVSEIYGRE 108
Query: 574 FLTL-DESRVYVLNTLFNLPETYLIACLID 660
+ L ESR LNTLF++ E + ++D
Sbjct: 109 LVDLRKESRWEFLNTLFSVSEAVMFMQMVD 138
>05_07_0284 - 28943527-28943625,28944417-28944785
Length = 155
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 464 VSNQRPLTGNEGSYSNSNISLGYPLTTNLSLVKLNPNVSYCGDLY 330
+ + PL G +G Y N + +P T + S + NP ++ ++Y
Sbjct: 111 LDRRSPLRGVQGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY 155
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 268 RSLHLENVKFYGFDMDYTLAEYKSPQYETLG 360
R LHLE+V+F G DYTL + P E LG
Sbjct: 300 RELHLEHVRFNG---DYTLDDAMLPLLEYLG 327
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 193 VPDSSR*KYYVQEILSSC*TQIFVNRSL---HLENVKFYGFDMDYTLAE 330
+ D+++ QE+LSSC +FV+ L LE G D YT E
Sbjct: 541 ITDANKLPLRTQEVLSSCHALVFVDNKLVGDPLEKAAIKGIDWIYTSDE 589
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 155 NSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHK 256
+S F D +E E L QD + KKY + EHK
Sbjct: 123 DSPFGPDAFREYETLLTQDHEELLKKYEKSDEHK 156
>08_02_0890 +
22309061-22309086,22309172-22309253,22309349-22309441,
22309526-22309720
Length = 131
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +1
Query: 331 YKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRGLWFD 462
YK P L E L V G R EF Y PS P WFD
Sbjct: 38 YKQPNLSNLCGYYVCEMLRVCGRYRT--EFTYLPSIPYNASWFD 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,002,595
Number of Sequences: 37544
Number of extensions: 326123
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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