Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021369
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)            64   1e-10
SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)                  60   2e-09
SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     30   1.6  
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)
          Length = 172

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = +1

Query: 403 REILEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNI*CVYMGFEFL 537
           +++L F+YDP FPVRGL+FD   GNLLKVD YGNI     GF+FL
Sbjct: 18  QDLLSFQYDPIFPVRGLFFDCELGNLLKVDTYGNILSCVHGFDFL 62


>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
          Length = 403

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/73 (39%), Positives = 40/73 (54%)
 Frame = +1

Query: 256 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPS 435
           IF N  L L+ +  YGFD DYTLA Y +  +  +        L   GYP+ +   +Y+P 
Sbjct: 67  IFANNELSLKYINVYGFDYDYTLASYSNTLHFLIYDLAVGNLLSFFGYPKGVEGMKYNPE 126

Query: 436 FPVRGLWFDTLYG 474
           F VRGL +DT+ G
Sbjct: 127 FAVRGLHYDTVNG 139


>SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = +1

Query: 445 RGLWFDTLYGNLLKVDAYGNI*CVYMGFEFL 537
           RGL+FD   GNLLKVD YGNI     GF+FL
Sbjct: 54  RGLFFDCELGNLLKVDTYGNILSCVHGFDFL 84


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 262 VNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLV-VKGYPREILE 417
           V R+LH+   +F  +D D    +Y    Y T  F +T+   V VKG PRE+LE
Sbjct: 404 VGRTLHIMGRRFLLYDCD----QYTKDFYRT-NFGVTEFPAVDVKGAPRELLE 451


>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1678

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 364 NLTKERLVVKGYPREILEFEYDPSFPVRGLWFDTLYGNLLKVD 492
           ++T E LV+    RE  + E+ P    + LW+D+     L+VD
Sbjct: 661 SMTSEELVLLAKAREYFKEEWQPIMNKKALWWDSALCYHLRVD 703


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +1

Query: 328  EYKSPQYETLGFNLTKERLVVKGYPREILEF--EYDPSFPVRGLWFDTLYGNLLKVDAYG 501
            +Y S ++E    NL   + V   YP + ++    +D   P R  ++ TLY   +  D Y 
Sbjct: 1946 KYTSQRFECERLNLMARKGV---YPYDYMDSLERFDEKLPAREDFYSTLYDQHISEDEYK 2002

Query: 502  NI*CVYMGFEFLKHSQVYELY 564
            +   V+  F+       ++LY
Sbjct: 2003 HAIAVWEEFKLKTMRDYHDLY 2023


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 109 YSTSEHALFLLSTVPLANLWNKIFTILGYHLP 14
           YSTS+  L LL  V   N W + F + G  LP
Sbjct: 84  YSTSQERLTLLVDVDGKNEWRECFDVGGVKLP 115


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 256  IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPS 435
            +F  R +H   + F+G  + +T  + KS Q  +L   ++K  +    +PR +  + YDPS
Sbjct: 1538 VFEKRGMHPFGMAFFGDKLYWTDYKTKSVQELSLSSGVSKPFVRRLSFPRGL--YVYDPS 1595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,031,828
Number of Sequences: 59808
Number of extensions: 431396
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)