Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021366
(696 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 183 3e-45
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 157 2e-37
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 146 3e-34
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 139 5e-32
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 133 3e-30
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 130 3e-29
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 127 2e-28
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 126 5e-28
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 123 5e-27
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 122 6e-27
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 121 1e-26
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 121 1e-26
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 120 3e-26
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 116 6e-25
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 47 4e-04
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 47 5e-04
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 45 0.002
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 44 0.005
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 43 0.006
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 42 0.014
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 42 0.019
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 41 0.033
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 39 0.10
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 38 0.18
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 36 0.72
UniRef50_A0YA01 Cluster: Putative uncharacterized protein; n=1; ... 36 0.72
UniRef50_Q5ZU85 Cluster: ATP dependent DNA helicase (DEAD box fa... 36 0.95
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 36 1.3
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 35 1.7
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 35 2.2
UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Re... 35 2.2
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 34 2.9
UniRef50_A5BR77 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 34 2.9
UniRef50_A6RJ24 Cluster: Putative uncharacterized protein; n=2; ... 34 3.8
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 34 3.8
UniRef50_Q0U4G0 Cluster: Putative uncharacterized protein; n=1; ... 33 5.1
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 33 6.7
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 33 6.7
UniRef50_A5K2Z8 Cluster: Putative uncharacterized protein; n=1; ... 33 8.8
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 183 bits (446), Expect = 3e-45
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +2
Query: 8 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 187
PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA
Sbjct: 1327 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 1386
Query: 188 NANRSDPDWRYTAVRIFSKTQHK 256
NANRSDPDWRYTAVRIFSKTQHK
Sbjct: 1387 NANRSDPDWRYTAVRIFSKTQHK 1409
Score = 160 bits (389), Expect = 3e-38
Identities = 90/148 (60%), Positives = 95/148 (64%), Gaps = 4/148 (2%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPY L
Sbjct: 1410 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPY---DL 1466
Query: 436 LRPI*NHYKFMS--AMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPL--LHQNQHYK 603
R +H K + + S G E SI S+ L +
Sbjct: 1467 SRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITS 1526
Query: 604 SIWTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYNIAVI
Sbjct: 1527 QFGPLTCMRLTGEPGTYDDNTDYNIAVI 1554
Score = 76.2 bits (179), Expect = 7e-13
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG
Sbjct: 1495 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 1529
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/49 (69%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 LSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRKWS--GFPFHLI 563
LSRFASSHLKPLQIHVCNDYSAFDQSQHG + +K P HLI
Sbjct: 1466 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLI 1514
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 157 bits (382), Expect = 2e-37
Identities = 89/208 (42%), Positives = 118/208 (56%), Gaps = 6/208 (2%)
Frame = +2
Query: 8 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 187
PY ++P DE+LG+ L+ + CRAY R P PF PDL+ ECINLNE++QLS+KTQA I A
Sbjct: 1357 PYVIAPRDEILGSLLYEAWCRAYHRSPRDVEPFDPDLYAECINLNEFAQLSSKTQATIMA 1416
Query: 188 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHARH*P*CMMPLS*FLARSRNISEFS 367
NANRSDPDWR++AVRIF+KTQHK + K + + L + F
Sbjct: 1417 NANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRFF 1476
Query: 368 TVKIVLPTCLCMEAKLHTSLSVC------FVPSETITNSCLQ*LLCL*PISAWEAVVLER 529
+ P+ L + A HT + P+ + N EAVV ER
Sbjct: 1477 DQR-DRPSTLYVHAG-HTPFEMADWCRAHLTPAVKLAND----YTAFDQSQHGEAVVFER 1530
Query: 530 KKMERLSIPSHLIDLHCYIKTNITSQFG 613
KM RLSIP+ L+DLH Y+KTN+++QFG
Sbjct: 1531 YKMNRLSIPAELVDLHVYLKTNVSTQFG 1558
Score = 126 bits (304), Expect = 5e-28
Identities = 70/147 (47%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
+NEGS+FG WKACQTLALMHDA+VL+ GP+KKYQR FD +DRP L+V+ G TP+
Sbjct: 1440 VNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADW 1499
Query: 436 LRP-I*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPL-LHQNQHYKS- 606
R + K + T + S G E SI + L ++ + +
Sbjct: 1500 CRAHLTPAVKLANDYTAF---DQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQ 1556
Query: 607 IWTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYNIAV+
Sbjct: 1557 FGPLTCMRLTGEPGTYDDNTDYNIAVL 1583
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 423 LSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRK 536
++ + +HL P + + NDY+AFDQSQHG + + K
Sbjct: 1496 MADWCRAHLTPA-VKLANDYTAFDQSQHGEAVVFERYK 1532
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 146 bits (355), Expect = 3e-34
Identities = 85/208 (40%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
Frame = +2
Query: 5 TPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQ 184
+PY +P+D +LG L+++ C+A+ R PN +PF P LF ECI LNEY+QLS+KTQA I
Sbjct: 1346 SPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIV 1405
Query: 185 ANANRSDPDWRYTAVRIFSKTQHK----STKAQFSALGKHARH*P*CMMPLS*FLARSRN 352
+NA+RSDPDWRYT VRIF+K+QHK S + A A ++ L R
Sbjct: 1406 SNASRSDPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRI 1465
Query: 353 ISEFSTVKIVLPTCLCMEAKLHTSLSVCFVPSET-ITNSCLQ*LLCL*PISAWEAVVLER 529
I + + C ++L ++ S F+ + I N EAV+ E
Sbjct: 1466 IDHYDRPNFIYTHCGKTPSEL-SAWSHSFLKGDAYICND----YTSFDQSQHGEAVIFES 1520
Query: 530 KKMERLSIPSHLIDLHCYIKTNITSQFG 613
KM R+ IP HLIDLH Y+KTN+++QFG
Sbjct: 1521 LKMHRVGIPRHLIDLHIYLKTNVSTQFG 1548
Score = 111 bits (268), Expect = 1e-23
Identities = 63/148 (42%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
+N+GSIFG WKACQTLALMHD ++L GP+KKYQR+ D DRP ++ + G+TP
Sbjct: 1430 VNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTP----SE 1485
Query: 436 LRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPL-LH---QNQHYK 603
L + + A T+ H + R + LH +
Sbjct: 1486 LSAWSHSFLKGDAYICNDYTSFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNVST 1545
Query: 604 SIWTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYN+AVI
Sbjct: 1546 QFGPLTCMRLTGEPGTYDDNTDYNLAVI 1573
Score = 42.7 bits (96), Expect = 0.008
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 LSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRKWS--GFPFHLI 563
LS ++ S LK ++CNDY++FDQSQHG + + K G P HLI
Sbjct: 1486 LSAWSHSFLKG-DAYICNDYTSFDQSQHGEAVIFESLKMHRVGIPRHLI 1533
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 139 bits (337), Expect = 5e-32
Identities = 75/147 (51%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTP-YVSLG 432
+NEGSIFG WKACQTLALMHDA+VL+ GP+KKYQRVFD++DRP +L+++ GQTP +SL
Sbjct: 1481 VNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLW 1540
Query: 433 LLRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPL-LHQNQHYKS- 606
+ K + T + S G E SI + L +H H ++
Sbjct: 1541 CQTHLTPAVKLANDYTAF---DQSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVETQ 1597
Query: 607 IWTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYN+AVI
Sbjct: 1598 FGPLTCMRLTGEPGTYDDNTDYNLAVI 1624
Score = 128 bits (309), Expect = 1e-28
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = +2
Query: 5 TPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQ 184
+PYR+SP DE+LG L+ SLCRAY R P PF LFVECI+LNE++QL++KTQAVI
Sbjct: 1397 SPYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVECIDLNEFAQLTSKTQAVIM 1456
Query: 185 ANANRSDPDWRYTAVRIFSKTQHK 256
NA RSDPDWR++AVRIFSKTQHK
Sbjct: 1457 GNARRSDPDWRWSAVRIFSKTQHK 1480
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 133 bits (322), Expect = 3e-30
Identities = 73/147 (49%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTP-YVSLG 432
+NEGSIFG WKACQTLALMHDA+VLI GP+KKYQRVFD +DRP +L+++ G TP +S
Sbjct: 1619 VNEGSIFGSWKACQTLALMHDAVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNW 1678
Query: 433 LLRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPL-LHQNQHYKSI 609
+ + K + T + S G E SI L +H H +
Sbjct: 1679 CQQHLTTAVKLANDYTAF---DQSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQ 1735
Query: 610 W-TLTCMRLTGEPGTYDDNTDYNIAVI 687
+ LTCMRLTGEPGTYDDN+DYN+AVI
Sbjct: 1736 FGPLTCMRLTGEPGTYDDNSDYNLAVI 1762
Score = 128 bits (310), Expect = 1e-28
Identities = 56/83 (67%), Positives = 65/83 (78%)
Frame = +2
Query: 8 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 187
PY+++P DE+LG LF LCRAY R P H F P LF ECINLNE++QLS+KTQA I
Sbjct: 1536 PYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLNEFAQLSSKTQATIMG 1595
Query: 188 NANRSDPDWRYTAVRIFSKTQHK 256
NA RSDPDWR++AVRIFSKTQHK
Sbjct: 1596 NARRSDPDWRWSAVRIFSKTQHK 1618
Score = 58.4 bits (135), Expect = 2e-07
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVVLERKKMERLSIP LIDLH ++KT++++QFG
Sbjct: 1703 EAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFG 1737
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 130 bits (314), Expect = 3e-29
Identities = 70/146 (47%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
+N+ SIFG WKACQTLALMHDA+VL+ GP+KKYQR+FD+ DRP N+FVY G TP
Sbjct: 1513 VNDHSIFGGWKACQTLALMHDAVVLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANW 1572
Query: 436 LRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPL-LHQNQHYKS-I 609
R N + S G E +I S+ L +H + +
Sbjct: 1573 CRA--NLKPGERVANDYTSFDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQF 1630
Query: 610 WTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYN+AV+
Sbjct: 1631 GPLTCMRLTGEPGTYDDNTDYNLAVL 1656
Score = 118 bits (284), Expect = 1e-25
Identities = 51/83 (61%), Positives = 66/83 (79%)
Frame = +2
Query: 8 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 187
PYR++ DE+LG+ LF + C A R P+ VPF +LF ECI LNE++QLS+KTQA+I A
Sbjct: 1430 PYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAECIALNEFAQLSSKTQAIIMA 1489
Query: 188 NANRSDPDWRYTAVRIFSKTQHK 256
N +RSDPDWR++AVRIF+KTQHK
Sbjct: 1490 NRDRSDPDWRWSAVRIFAKTQHK 1512
Score = 63.3 bits (147), Expect = 5e-09
Identities = 27/35 (77%), Positives = 33/35 (94%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVV ERKKMERL+IPSHLIDLH ++KTN+++QFG
Sbjct: 1597 EAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQFG 1631
Score = 38.3 bits (85), Expect = 0.18
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 LSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRKWS--GFPFHLI 563
++ + ++LKP + V NDY++FDQSQHG + + +K P HLI
Sbjct: 1569 MANWCRANLKPGE-RVANDYTSFDQSQHGEAVVFERKKMERLNIPSHLI 1616
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 127 bits (307), Expect = 2e-28
Identities = 57/88 (64%), Positives = 70/88 (79%)
Frame = +2
Query: 5 TPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQ 184
+PY ++PSD++LG LFSSLC AY R+PN +PFQP+LF ECI +N+Y+QLS+KTQA I
Sbjct: 1416 SPYSITPSDQLLGQHLFSSLCLAYGRNPNSVLPFQPELFSECICINDYAQLSSKTQATIV 1475
Query: 185 ANANRSDPDWRYTAVRIFSKTQHKSTKA 268
AN RSDPDWR TAVRIF+K QHK A
Sbjct: 1476 ANHQRSDPDWRLTAVRIFAKAQHKVNDA 1503
Score = 117 bits (281), Expect = 3e-25
Identities = 70/150 (46%), Positives = 89/150 (59%), Gaps = 6/150 (4%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
+N+ SIF WKACQTLALMH I+L+ GP+KKYQR+FDSKDRPP+++ + G+TP L
Sbjct: 1500 VNDASIFSGWKACQTLALMHGYIILVLGPVKKYQRIFDSKDRPPHIYYHCGKTP---SQL 1556
Query: 436 LRPI*NHYKFMSAMTT-LPLTNLSMGGRCFGTEENGAAFHSISSYRPPLLHQNQHYK-SI 609
+ H S + + S G E SI L+ + H K S+
Sbjct: 1557 SQWCQTHLSGSSYIANDYTAFDQSQHGEAVVLECLKMRRLSIPD---SLIQLHSHLKCSV 1613
Query: 610 WT----LTCMRLTGEPGTYDDNTDYNIAVI 687
T LTCMRLTGEPGTYDDN+DYN+AVI
Sbjct: 1614 DTQFGPLTCMRLTGEPGTYDDNSDYNLAVI 1643
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVVLE KM RLSIP LI LH ++K ++ +QFG
Sbjct: 1584 EAVVLECLKMRRLSIPDSLIQLHSHLKCSVDTQFG 1618
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 420 RLSRFASSHLKPLQIHVCNDYSAFDQSQHG 509
+LS++ +HL ++ NDY+AFDQSQHG
Sbjct: 1555 QLSQWCQTHLSGSS-YIANDYTAFDQSQHG 1583
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 126 bits (304), Expect = 5e-28
Identities = 67/146 (45%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
+N+GSIFG WKACQTLALMHD ++L+ GP+KKYQR+FD+ DRPPN++ + G+TP
Sbjct: 1504 VNDGSIFGSWKACQTLALMHDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDW 1563
Query: 436 LRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPL-LHQNQHYKS-I 609
+ H + S G E +I S+ L +H + +
Sbjct: 1564 CQEHLTH-STPKIANDYTAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQF 1622
Query: 610 WTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYN+AVI
Sbjct: 1623 GPLTCMRLTGEPGTYDDNTDYNLAVI 1648
Score = 125 bits (301), Expect = 1e-27
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +2
Query: 5 TPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQ 184
+P++++ D VLG LF SLCRAY R PN VPF P+LF ECI+LNEY+QLS+KTQ+ I
Sbjct: 1420 SPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECISLNEYAQLSSKTQSTIV 1479
Query: 185 ANANRSDPDWRYTAVRIFSKTQHK 256
ANA+RSDPDWR+T V+IF+K QHK
Sbjct: 1480 ANASRSDPDWRHTTVKIFAKAQHK 1503
Score = 54.4 bits (125), Expect = 3e-06
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
E+VVLE KM+RL+IPSHLI LH ++KTN+++QFG
Sbjct: 1589 ESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFG 1623
Score = 37.9 bits (84), Expect = 0.24
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 396 CVWRPNSIRLSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRKWS--GFPFHLI 563
C PN +R + HL + NDY+AFDQSQHG + K P HLI
Sbjct: 1553 CGKTPNQLR--DWCQEHLTHSTPKIANDYTAFDQSQHGESVVLEALKMKRLNIPSHLI 1608
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 123 bits (296), Expect = 5e-27
Identities = 74/161 (45%), Positives = 95/161 (59%), Gaps = 5/161 (3%)
Frame = +1
Query: 220 HCCPHIF-KNSA*INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLF 396
H IF K+ +N+GSIFGPWKACQTLALMHD ++L GP+KKYQR+FD +RP +++
Sbjct: 1394 HTFVKIFAKSQHKVNDGSIFGPWKACQTLALMHDYVILTLGPVKKYQRLFDQLERPSHIY 1453
Query: 397 VYGGQTPYVSLGLLRPI*NHYKFMSAMTTLPLT--NLSMGGRCFGTEENGAAFHSISSYR 570
+ G TP+ L R H + S TT T + S G E SI
Sbjct: 1454 YHAGNTPH---DLRRWCSKHLE-TSHCTTNDYTAFDQSQHGEAVVFEVLKMRRLSIPENL 1509
Query: 571 PPL-LHQNQHYKS-IWTLTCMRLTGEPGTYDDNTDYNIAVI 687
L +H + ++ LTCMRLTGEPGTYDDNTDYN+AV+
Sbjct: 1510 ISLHVHLKTNVETQFGPLTCMRLTGEPGTYDDNTDYNLAVL 1550
Score = 116 bits (280), Expect = 4e-25
Identities = 49/83 (59%), Positives = 67/83 (80%)
Frame = +2
Query: 8 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 187
PY+++PSD LG L+ S C+ Y+R PN ++PF LF+ECI +N+Y+QLS+KTQA I A
Sbjct: 1324 PYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLECIAVNDYAQLSSKTQATIVA 1383
Query: 188 NANRSDPDWRYTAVRIFSKTQHK 256
NA+RSDPDWR+T V+IF+K+QHK
Sbjct: 1384 NASRSDPDWRHTFVKIFAKSQHK 1406
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVV E KM RLSIP +LI LH ++KTN+ +QFG
Sbjct: 1491 EAVVFEVLKMRRLSIPENLISLHVHLKTNVETQFG 1525
Score = 33.9 bits (74), Expect = 3.8
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 423 LSRFASSHLKPLQIHVCNDYSAFDQSQHG 509
L R+ S HL+ NDY+AFDQSQHG
Sbjct: 1463 LRRWCSKHLETSHC-TTNDYTAFDQSQHG 1490
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 122 bits (295), Expect = 6e-27
Identities = 51/84 (60%), Positives = 66/84 (78%)
Frame = +2
Query: 5 TPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQ 184
+PY +P+D +LG LF SLC Y RHP+ +PF P LF ECI +N+Y+QLS+KT+A I
Sbjct: 1319 SPYCFTPNDFILGEHLFQSLCSVYNRHPSESIPFDPVLFAECICINDYAQLSSKTKATIV 1378
Query: 185 ANANRSDPDWRYTAVRIFSKTQHK 256
ANA RSDPDWRYT+V+IF+K+QHK
Sbjct: 1379 ANAERSDPDWRYTSVKIFAKSQHK 1402
Score = 113 bits (273), Expect = 3e-24
Identities = 66/149 (44%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
+N+GSIFG WKACQTLALMHD ++L GP+KKYQR FD KD P +++ + G+TP
Sbjct: 1403 VNDGSIFGNWKACQTLALMHDYVILTLGPVKKYQRFFDQKDCPAHIYKHCGKTPADLSIW 1462
Query: 436 LRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPLLHQNQHYKS--- 606
+ +H ++ T + S G E I L+ + H K+
Sbjct: 1463 CKTNLSHQVYIENDYT--SFDQSQHGEAVVLEVLKMQRLQIPK---ELIELHVHLKTNVD 1517
Query: 607 --IWTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYN+AVI
Sbjct: 1518 TQFGPLTCMRLTGEPGTYDDNTDYNLAVI 1546
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVVLE KM+RL IP LI+LH ++KTN+ +QFG
Sbjct: 1487 EAVVLEVLKMQRLQIPKELIELHVHLKTNVDTQFG 1521
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 121 bits (292), Expect = 1e-26
Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Frame = +1
Query: 220 HCCPHIF-KNSA*INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLF 396
H IF K +NE S+F WKACQTLALMHD ++L+ GP+KKYQR+ DS+DRP +L+
Sbjct: 1602 HTFVRIFSKTQHKVNENSLFTSWKACQTLALMHDYLILVLGPVKKYQRILDSRDRPAHLY 1661
Query: 397 VYGGQTPYVSLGLLRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAF------HSI 558
++ GQTP+ L NH P +L+ F ++G A
Sbjct: 1662 IHAGQTPH---QLSEWCQNH--------LTPSVHLANDYTAFDQSQHGEAVVLEAWKMRR 1710
Query: 559 SSYRPPLLHQNQHYKS-----IWTLTCMRLTGEPGTYDDNTDYNIAVI 687
+S P + + H K+ LTCMR+TGEPGTYDDNTDYN+A++
Sbjct: 1711 ASIPEPFITLHVHVKTNIECQFGPLTCMRITGEPGTYDDNTDYNLAIL 1758
Score = 106 bits (255), Expect = 4e-22
Identities = 51/83 (61%), Positives = 61/83 (73%)
Frame = +2
Query: 8 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 187
PY ++ D+ LG L+ SL RAY R P VPF P LF CI N+++QL++KTQA IQA
Sbjct: 1533 PYTITAKDQALGYILYHSLQRAYCRSPE-PVPFDPVLFASCIAENDFAQLTSKTQATIQA 1591
Query: 188 NANRSDPDWRYTAVRIFSKTQHK 256
NA RSDPDWR+T VRIFSKTQHK
Sbjct: 1592 NAFRSDPDWRHTFVRIFSKTQHK 1614
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVVLE KM R SIP I LH ++KTNI QFG
Sbjct: 1699 EAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFG 1733
Score = 41.9 bits (94), Expect = 0.014
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 420 RLSRFASSHLKPLQIHVCNDYSAFDQSQHG 509
+LS + +HL P +H+ NDY+AFDQSQHG
Sbjct: 1670 QLSEWCQNHLTP-SVHLANDYTAFDQSQHG 1698
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 121 bits (292), Expect = 1e-26
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Frame = +1
Query: 220 HCCPHIF-KNSA*INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLF 396
H IF K+ +N+ SIFG WKACQTLALMHD ++L GP+KKYQR+FD+ DRPP+L+
Sbjct: 1521 HTAVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSLGPVKKYQRIFDALDRPPHLY 1580
Query: 397 VYGGQTPY-VSLGLLRPI*NHYKFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRP 573
+ G++P +S + K + T + S G E SI S+
Sbjct: 1581 THCGKSPADLSAWCQTHLTGQIKLTNDYTAF---DQSQHGESVILEALKMKRLSIPSH-- 1635
Query: 574 PLLHQNQHYKS-----IWTLTCMRLTGEPGTYDDNTDYNIAVI 687
L+ + H K+ LTCMRLTGEPGTYDDN+DYN+AVI
Sbjct: 1636 -LIQLHVHLKTNVATQFGPLTCMRLTGEPGTYDDNSDYNLAVI 1677
Score = 116 bits (279), Expect = 6e-25
Identities = 52/87 (59%), Positives = 67/87 (77%)
Frame = +2
Query: 8 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQA 187
P+ LS D +LG LF +LC+AY+R+P H PF P LF ECI LN+Y+QLS+KTQA + A
Sbjct: 1451 PHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKTQATLVA 1510
Query: 188 NANRSDPDWRYTAVRIFSKTQHKSTKA 268
N +RSDPDWR+TAV+IF+K+QHK A
Sbjct: 1511 NHSRSDPDWRHTAVKIFAKSQHKVNDA 1537
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
E+V+LE KM+RLSIPSHLI LH ++KTN+ +QFG
Sbjct: 1618 ESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFG 1652
Score = 39.1 bits (87), Expect = 0.10
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 LSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRKWS--GFPFHLI 563
LS + +HL QI + NDY+AFDQSQHG + K P HLI
Sbjct: 1590 LSAWCQTHLTG-QIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLI 1637
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 120 bits (289), Expect = 3e-26
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +2
Query: 11 YRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQAN 190
Y+LS D++LG L+ S CRAY RHP VPF LF ECIN+NE++Q SNKT++ I AN
Sbjct: 1355 YQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFAECININEFAQSSNKTKSTIIAN 1414
Query: 191 ANRSDPDWRYTAVRIFSKTQHKSTKA 268
A+RSDPDWR TAV+IFSKTQHK +A
Sbjct: 1415 ASRSDPDWRITAVKIFSKTQHKINEA 1440
Score = 115 bits (277), Expect = 1e-24
Identities = 68/150 (45%), Positives = 87/150 (58%), Gaps = 6/150 (4%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
INE SIFG WKACQTLALMHD +VL GP+K YQR+FDS++RP N++ + G +P L +
Sbjct: 1437 INEASIFGSWKACQTLALMHDYVVLFLGPVKIYQRIFDSQERPANVYYHAGHSP---LEM 1493
Query: 436 LRPI*NHYKF-MSAMTTLPLTNLSMGGRCFGTEENGAAFHSISSYRPPLLHQNQHYK--- 603
H + +S + S G E A + S L++ + + K
Sbjct: 1494 SEWAQKHLQSGISHTNDYTAFDQSQHGEAVVFEM--AKMRRL-SIPESLINLHSYLKRNV 1550
Query: 604 --SIWTLTCMRLTGEPGTYDDNTDYNIAVI 687
LTCMRLTGEPGTYDDNTDYN+AVI
Sbjct: 1551 DTQFGPLTCMRLTGEPGTYDDNTDYNLAVI 1580
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +2
Query: 509 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFG 613
EAVV E KM RLSIP LI+LH Y+K N+ +QFG
Sbjct: 1521 EAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFG 1555
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 417 IRLSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRK 536
+ +S +A HL+ H NDY+AFDQSQHG + + K
Sbjct: 1491 LEMSEWAQKHLQSGISHT-NDYTAFDQSQHGEAVVFEMAK 1529
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 116 bits (279), Expect = 6e-25
Identities = 66/152 (43%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Frame = +1
Query: 256 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGL 435
+NE SIF WKACQTLAL HDA++L+ GP+KKYQR FD+K RP ++ + TP+
Sbjct: 4 VNEASIFSDWKACQTLALAHDAVILLLGPVKKYQRCFDNKARPSKIYYHASHTPFELSTW 63
Query: 436 LRPI*NHYKFMSAMTT-LPLTNLSMGGRCFGTEENGAAFHSISSYRPPLLHQNQHYKS-- 606
+ H K +T + S GG E SI PL+ + H K+
Sbjct: 64 CQA---HMKTQHHLTNDYTAYDQSQGGEAVVLERLKMLRVSIPQ---PLIDLHVHLKTNV 117
Query: 607 ---IWTLTCMRLTGEPGTYDDNTDYNIAVITA 693
+ LT MRLTGEPGTYDDN+DYN+AV A
Sbjct: 118 DTQLGPLTSMRLTGEPGTYDDNSDYNLAVTAA 149
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 47.2 bits (107), Expect = 4e-04
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGLLRPI*NHYKF 465
K QT+A H A V++FG + +Y R +P ++ + TP H+KF
Sbjct: 1263 KPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGGHWKF 1322
Query: 466 MSAMTTLPLT--NLSMGGRCFGTEENGAAFHSISS--YRPPLLHQNQHYKSIWTLTCMRL 633
T + S G E A HSI L + + TL MRL
Sbjct: 1323 KGPSLANDFTAFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLAIMRL 1382
Query: 634 TGEPGTYDDNTDYNIA 681
TGE T+D NT+ NIA
Sbjct: 1383 TGEGPTFDANTECNIA 1398
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 46.8 bits (106), Expect = 5e-04
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTP--YVSLGLLRPI*NHY 459
KA QT+A V+I+G + +Y R F ++ P +FV TP + S L N
Sbjct: 1013 KAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKIFVNCETTPADFNSFILDEWNFNRT 1072
Query: 460 KFMSAMTTLPLTNLSMGGRCFGTEENGAAFHSI-SSYRPPLLHQNQHYK-SIWTLTCMRL 633
F + T + S G E A FH+I + H K + TL+ MRL
Sbjct: 1073 CFSNDFTAF---DQSQDGSILQFEVIKAKFHNIPEDVIEGYIQIKTHAKIFLGTLSIMRL 1129
Query: 634 TGEPGTYDDNTDYNIA 681
+GE T+D NT+ NIA
Sbjct: 1130 SGEGPTFDANTEANIA 1145
Score = 38.7 bits (86), Expect = 0.13
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +2
Query: 38 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWR 217
+G LF + +A P +PF PDL+ C E + L A++ A A R PD+
Sbjct: 931 IGDILFLNYKQAMNL-PQDPIPFNPDLWTLCRQEIENTYLKKSAAALVNA-ATRQSPDFD 988
Query: 218 YTAVRIFSKTQ 250
A+ +F K+Q
Sbjct: 989 SHAIALFLKSQ 999
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 44.8 bits (101), Expect = 0.002
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGLLRPI*NHYKF 465
K QT+A A V+++G + +Y R + P N+ + +TP L R + NH+ F
Sbjct: 1082 KPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTP---ADLSRWVRNHWDF 1138
Query: 466 MSAMTTLPLT--NLSMGGRCFGTEENGAAFHSISSYRPPLLHQNQHYKSIWT--LTCMRL 633
T + S G E A F ++ + + I+T L MRL
Sbjct: 1139 TKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRL 1198
Query: 634 TGEPGTYDDNTDYNIA 681
TGE T+D NT+ NIA
Sbjct: 1199 TGEGPTFDANTECNIA 1214
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +2
Query: 32 EVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPD 211
+V G+ LF + RA P + F L EC N+ L++K A + NA RSDP
Sbjct: 1528 KVAGSELFEAFTRAI---PLPQETFNDSLLEECRTENDTVHLTSKPLATLINNAERSDPS 1584
Query: 212 WRYTAVRIFSKTQ 250
W +++F K Q
Sbjct: 1585 WSLNMIKLFIKGQ 1597
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 43.2 bits (97), Expect = 0.006
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPY-VSLGLLRPI*NHYK 462
K QT+A + V++FG + +Y R F +P +F+ TP +S L N++
Sbjct: 1178 KPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWAL----NNWN 1233
Query: 463 FMSAMTTLPLT--NLSMGGRCFGTEENGAAFHSISSYRPPL---LHQNQHYKSIWTLTCM 627
F T + S G E A H I + N H + TL+ M
Sbjct: 1234 FSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHI-FLGTLSIM 1292
Query: 628 RLTGEPGTYDDNTDYNIA 681
RLTGE T+D NT+ NIA
Sbjct: 1293 RLTGEGPTFDANTECNIA 1310
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 41.9 bits (94), Expect = 0.014
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +2
Query: 38 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWR 217
+G LF + RA K P + +PF DL+ C N + + LS +++ A R DPD+
Sbjct: 965 IGDLLFINYHRAMKL-PKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVA-RQDPDFP 1022
Query: 218 YTAVRIFSKTQ 250
+++F K+Q
Sbjct: 1023 INEIKLFLKSQ 1033
Score = 39.9 bits (89), Expect = 0.058
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGLLRPI*NHYKF 465
K QT+A A V+++G + +Y R +P N+F+ +TP L +++
Sbjct: 1046 KPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCEKTP-ADLDEWAKANWNFEG 1104
Query: 466 MSAMTTLPLTNLSMGGRCFGTEENGAAFHSI-SSYRPPLLHQNQHYK-SIWTLTCMRLTG 639
++ + S G E A FH+I S + + K + L MRL+G
Sbjct: 1105 LAHSNDFTAFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSG 1164
Query: 640 EPGTYDDNTDYNIA 681
E T+D NT+ +IA
Sbjct: 1165 EGPTFDANTECSIA 1178
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 41.5 bits (93), Expect = 0.019
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGLLRPI*NHYKF 465
K QT+A H V+++G + +Y R + P ++ + +TP ++ + F
Sbjct: 1215 KPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDF 1274
Query: 466 MSAMTTLPLTNLSMGGRCFGTEENGAAFHSI-SSYRPPLLHQNQHYKS-IWTLTCMRLTG 639
A + S G E A FH+I + + K + TL MRLTG
Sbjct: 1275 AYA-NDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTG 1333
Query: 640 EPGTYDDNTDYNIA 681
E T+D NT+ NIA
Sbjct: 1334 EGPTFDANTECNIA 1347
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 40.7 bits (91), Expect = 0.033
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGLLRPI*NHYKF 465
K QT+A V+++G + +Y R F P N+ + +TP L R + N++ F
Sbjct: 1106 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQ---DLSRWVLNYWDF 1162
Query: 466 MSAMTTLPLT--NLSMGGRCFGTEENGAAFHSISSYRPPLLHQNQHYKSIW--TLTCMRL 633
T + S G E A + ++ + + I+ TL+ MRL
Sbjct: 1163 SKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRL 1222
Query: 634 TGEPGTYDDNTDYNIA 681
TGE T+D NT+ NIA
Sbjct: 1223 TGEGPTFDANTECNIA 1238
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 39.1 bits (87), Expect = 0.10
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Frame = +1
Query: 286 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGLLRPI*NHYKF 465
K QT+A V+++G + +Y R + +P +F+ + P ++ N +K
Sbjct: 1233 KPGQTIASFMQETVMVYGTMSRYMRRIRQQHQPAEIFINCEKNPEDMTQFIKQGWN-FKR 1291
Query: 466 MSAMTTLPLTNLSMGGRCFGTEENGAAFHSI-SSYRPPLLHQNQHYKS-IWTLTCMRLTG 639
+ + S G E A + + + LH + K + TL MRL+G
Sbjct: 1292 QAYSNDFTAFDQSQDGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGTLAIMRLSG 1351
Query: 640 EPGTYDDNTDYNIA 681
E T+D NT+ +IA
Sbjct: 1352 EGPTFDANTECSIA 1365
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 38.3 bits (85), Expect = 0.18
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +2
Query: 74 YKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 250
+ + P +PF P L+ E E + LS KT A I ANR DPD+ V +F K+Q
Sbjct: 1016 FMKVPKDPMPFNPTLWAESRARAERTYLS-KTAAQILNGANRQDPDFPDNFVALFLKSQ 1073
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 36.3 bits (80), Expect = 0.72
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 41 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRY 220
G FL + P+H+ DL E ++ E ++S K+ A+I+ +ANRS DW
Sbjct: 1571 GKFLLDEFLKRVPLKPHHR----HDLMSEALHEFEEKKVS-KSAAIIENHANRSCSDWLA 1625
Query: 221 TAVRIFSKTQ 250
+FSK+Q
Sbjct: 1626 DVGLVFSKSQ 1635
>UniRef50_A0YA01 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 139
Score = 36.3 bits (80), Expect = 0.72
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = -1
Query: 546 SRSIFFRSKTTASHAEIGQRQSSHCRH-EFVMVSDGTKQTERDVWSLASIHKQVGRTIFT 370
S SIF S +A + ++Q S C + + ++ DG+ + +++++H+QV + +
Sbjct: 16 SFSIFACSSLSAQETSLDKQQLSACGYPDLPVIVDGSNANKS---AMSAMHQQVSEFVVS 72
Query: 369 VENSLIFLDRAKN 331
+E SL LD+A N
Sbjct: 73 IEGSLECLDKAAN 85
>UniRef50_Q5ZU85 Cluster: ATP dependent DNA helicase (DEAD box
family) Rad3; n=4; Legionella pneumophila|Rep: ATP
dependent DNA helicase (DEAD box family) Rad3 -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 666
Score = 35.9 bits (79), Expect = 0.95
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 570 SIR*DGMESRSIFFRSKTTASHAEIGQRQSSHCRHEFVMVSDGTKQTERDVWS 412
S+R ++ RS + HAE GQ QS C HE + V D Q + V S
Sbjct: 118 SVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRS 170
>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
Replicase - Lolium latent virus
Length = 440
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 86 PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTK 265
P+ VPF DL+ E S +K++ I+ NR DPDW+ + ++ K Q +
Sbjct: 369 PDEPVPFIRDLW-EQSEAEVLSTYLSKSEMAIKNGKNRQDPDWQDERMFVYLKAQWVTKA 427
Query: 266 AQFS 277
++F+
Sbjct: 428 SKFN 431
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 35.1 bits (77), Expect = 1.7
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 41 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRY 220
G LF + ++ P F L+ C L + LS T A +Q A R DPD+
Sbjct: 1118 GDLLFEAYA-SFMNVPKETQAFDKRLWAHCRQLALRTYLSKPT-ANLQQGAKRQDPDFPE 1175
Query: 221 TAVRIFSKTQ 250
A+ +F+K+Q
Sbjct: 1176 NAIALFNKSQ 1185
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 34.7 bits (76), Expect = 2.2
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +2
Query: 41 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRY 220
G LF + + + + P F L+ C L + LS K A +Q A+R DPD+
Sbjct: 1193 GDLLFEAYAQ-FMKVPAEPQAFDKRLWTHCRQLALRTYLS-KPAANLQQGASRQDPDFPD 1250
Query: 221 TAVRIFSKTQ 250
A+ +F+K+Q
Sbjct: 1251 NAIALFNKSQ 1260
>UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Rep:
Polyprotein - Blackberry virus X
Length = 244
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 131 INLNEYSQ-LSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 250
+++NE+ + K +A + N+ RSDPDW+ + +F K Q
Sbjct: 170 VSMNEFKENFFKKDEATMVRNSARSDPDWKKNEIFLFMKQQ 210
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 34.3 bits (75), Expect = 2.9
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 95 KVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 250
K F LF E N E +L K+ A ++ ++ RSDPDW IF K+Q
Sbjct: 1691 KPAFDHLLFDEARNDFEEKKLG-KSMATLENHSGRSDPDWEVEKALIFMKSQ 1741
>UniRef50_A5BR77 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 400
Score = 34.3 bits (75), Expect = 2.9
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 202 GSRLAVHCCPHIFKNSA*INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 381
G+ + VH A I G++ GP K ++ +H +++ GP + F+ +R
Sbjct: 195 GADVVVHSISKFISGGADIIAGAVCGPAKLVNSMMDLHQGALMLLGPTMNPKVAFELSER 254
Query: 382 PPNL 393
P+L
Sbjct: 255 IPHL 258
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 34.3 bits (75), Expect = 2.9
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 62 LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 241
L + + RH K L +C E ++LS K+ A I A++ RSD DW + +F
Sbjct: 1503 LAKVFLRHVPIKCGRDQRLLDQCRQEFEETKLS-KSAATIGAHSQRSDSDWPLDKIFLFM 1561
Query: 242 KTQ 250
K+Q
Sbjct: 1562 KSQ 1564
>UniRef50_A6RJ24 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 436
Score = 33.9 bits (74), Expect = 3.8
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 50 LFSSLCRAYKRHPNHKVPFQPDLFVE--CINL-NEYSQLSNKTQAVIQANANRSDPDWRY 220
+FSS Y + VP + + V C L N Y + +A++ AN SDPDW
Sbjct: 211 VFSSSATVYGTVADTGVPLREEYVVGSGCSGLTNPYGRTKWMCEAILSDLAN-SDPDWEI 269
Query: 221 TAVRIFS 241
TA+R F+
Sbjct: 270 TALRYFN 276
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 33.9 bits (74), Expect = 3.8
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Frame = +1
Query: 289 ACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYVSLGLLRPI*NHYKFM 468
A QT+A + V++FG + +Y R +P + + + + NH +
Sbjct: 1045 AGQTIAAFYQPTVMLFGTMARYMRRIRDTYQPGEILINCEKNQKHISKWVESNWNH-RLP 1103
Query: 469 SAMTTLPLTNLSMGGRCFGTEENGAAFHSISS--YRPPLLHQNQHYKSIWTLTCMRLTGE 642
+ + S G E A H I + + + TL MRLTGE
Sbjct: 1104 AYTNDFTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGE 1163
Query: 643 PGTYDDNTDYNIA 681
T+D NT+ NIA
Sbjct: 1164 GPTFDANTECNIA 1176
>UniRef50_Q0U4G0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1000
Score = 33.5 bits (73), Expect = 5.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 440 RSKPRETYGVWPPYTNKLGGRSLLSKTR*YFLIGPKIKTMAS 315
R + E Y WPP+ N L G LSKT L+G +AS
Sbjct: 608 RGESWEKYAFWPPHANALSGSHYLSKT--LVLVGTAANELAS 647
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 33.1 bits (72), Expect = 6.7
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 41 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRY 220
G LF + + + + P PF L+ C L + LS T + Q R DPD+
Sbjct: 1276 GDLLFEAYAQ-FMKVPKETQPFDKRLWTHCRQLALRTYLSKPTSNLQQGA--RQDPDFPD 1332
Query: 221 TAVRIFSKTQ 250
A+ +F+K+Q
Sbjct: 1333 NAIALFNKSQ 1342
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 33.1 bits (72), Expect = 6.7
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +2
Query: 41 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRY 220
G L S + PNH V F + N E +LS K+ A I+ ++ RS DW
Sbjct: 1615 GKALLSEFLKRVPLKPNHNVRFMEEALW---NFEE-KKLS-KSAATIENHSGRSCRDWPT 1669
Query: 221 TAVRIFSKTQ 250
+IFSK+Q
Sbjct: 1670 DVAQIFSKSQ 1679
>UniRef50_A5K2Z8 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 398
Score = 32.7 bits (71), Expect = 8.8
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 119 FVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHAR 298
F+ INLN+Y++++ + ++Q + PD+ +A RI S TK LG
Sbjct: 206 FLTIINLNQYAEIAALKELLLQKVKKVNAPDYVESAKRITSLLLTSETKNVGLLLGHRIL 265
Query: 299 H*P*CMMPL 325
+ P ++PL
Sbjct: 266 NTPISLVPL 274
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,615,020
Number of Sequences: 1657284
Number of extensions: 15236385
Number of successful extensions: 39895
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 38501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39862
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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