Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021366
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 28 1.1
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 28 1.5
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 1.9
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 2.6
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 3.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 7.8
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 7.8
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 25 7.8
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.8
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 426 RDVWSLASIHKQVGRTIFTVEN 361
RD+W LAS HK+ RT+ + N
Sbjct: 1010 RDLWRLASWHKESARTVKLLSN 1031
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 75 INDIPIIKFLFSPTFSLNV 131
IND+ ++K L P F+LNV
Sbjct: 124 INDVEVVKVLLEPDFNLNV 142
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 147 IHSFPTRLKLSSKRTQIVRIP 209
+H P R++LSS+ QI RIP
Sbjct: 4 LHGTPQRIQLSSRAIQICRIP 24
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 224 AVRIFSKTQHKSTKAQFSALGKHAR 298
A RIFSKT++ + A LGKHA+
Sbjct: 321 AKRIFSKTRNAISTAFTDMLGKHAK 345
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 492 QRQSSHCRHEFVMVSDGTKQ--TERDVWSLASIHKQVGRTIFTVENSLIFLD 343
Q Q++ H + + +K+ ++ D+WS A K++ ++FTV ++ FL+
Sbjct: 4 QDQNTGTTHVELQGGENSKKLFSKYDLWSKAMDEKKLSSSLFTVNDTQEFLE 55
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 402 WRPNSIRLSRFASSHLKPLQIHVCNDYSAFDQSQHGRPLFWNGRKWSGFPF 554
W P+ RL+ A +H L I C + Q H RPL + R SG F
Sbjct: 1070 WSPDH-RLTLTAYNHQTLLSI--CQIHKETCQMTHKRPLLGHVRSMSGIGF 1117
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 48 FCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSIHSFPTRLKLSSKR 188
F + +E + + I FL+ P N +++ HS + LKL+ R
Sbjct: 786 FAYKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLLKLNMDR 832
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 80 VYRLDIEMKTEMCQGLRQKEKVCKEC 3
V + DIE K ++ ++ EKVC C
Sbjct: 771 VIKNDIEKKRQLLGTIQDSEKVCDNC 796
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 14 RLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 121
RL D + S +C +R P + + F PDLF
Sbjct: 180 RLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLF 215
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 128 CI-NLNEYSQLSNKTQAVIQANANRSDPDWRYT 223
CI ++ YS AN NR DP +RYT
Sbjct: 445 CIASIEPYSLKDEPALLEALANMNREDPSFRYT 477
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,077
Number of Sequences: 5004
Number of extensions: 65973
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -