Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021366
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    31   1.2  
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397     30   1.5  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    30   2.0  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    29   3.5  
09_02_0610 - 11206198-11206588,11206812-11207001,11207116-112071...    29   4.7  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    28   6.2  
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637...    28   6.2  
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838...    28   6.2  
01_05_0800 - 25347048-25347365,25347474-25347563                       28   6.2  
12_02_0192 + 15213905-15214282                                         28   8.1  
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537...    28   8.1  

>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 148 FTAFQQDSSCHPSERKSFGS--RLAVHCCPHIFK 243
           FT FQ  SS    ++  F S  +L + CCPHI K
Sbjct: 898 FTPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISK 931


>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
          Length = 469

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 202 GSRLAVHCCPHIFKNSA*INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 381
           G+ + VH         A I  G+I GP      +  + +  +++ GP    +  F+  +R
Sbjct: 242 GADVVVHSVSKFISGGADIIAGAICGPASLVNAMMDLQEGALMLLGPTMNAKVAFELSER 301

Query: 382 PPNL 393
            P+L
Sbjct: 302 LPHL 305


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 47  FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANR 199
           F    + R Y R+  ++ PF PD+ V+ I+L + S L +   A I    +R
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLEDAEVAEILNEISR 241


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 625 CRSKSKLTCNVGFDVAMEVYKMRWNGK 545
           C S   L  + G D+AMEVYK+ WNG+
Sbjct: 677 CVSIEPLWDDTG-DIAMEVYKIVWNGQ 702


>09_02_0610 -
           11206198-11206588,11206812-11207001,11207116-11207184,
           11207546-11207672,11207809-11208128,11208196-11208353,
           11208503-11208580,11209484-11209555,11209994-11210135,
           11212580-11213064,11214362-11214947,11215093-11215177
          Length = 900

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 295 QTLALMHDAIVLIFGPIKKYQRVFDSKDR--PPNLFVYGGQTPYVSLGLLRPI 447
           Q  A + D +V   G  + Y+ VF    R  P  L   GG TP+VS   LRPI
Sbjct: 141 QRWATVDDVVVQTGGISRMYEVVFMGWARWAPACLVNVGGGTPFVSSVELRPI 193


>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
            27130165-27130255,27130515-27130595,27130764-27131830,
            27132060-27132071,27132465-27133209,27133210-27135244,
            27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 459  QIHVCNDYSAFDQS-QHGRPLFWNGRKWSGFPFHL 560
            ++ +C+D    D   + G PL WN R W   P +L
Sbjct: 1194 EMELCSDQIEGDMIWEDGHPLIWNPRDWEYQPLNL 1228


>03_02_0203 +
           6370729-6370850,6371213-6371391,6371516-6371625,
           6372721-6373575
          Length = 421

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 111 PTFSLNVSISMSIHSFPTRLKLSSKRTQIVRIPTGGTLLSAYF 239
           P++    SI++++ S+P RLKL +         T  +L SA+F
Sbjct: 235 PSYGRTASINLNLSSYPFRLKLPASPAARYEALTDLSLSSAWF 277


>02_05_1304 +
           35581172-35581345,35582504-35582748,35583148-35583829,
           35583908-35584262,35584558-35584649,35584889-35585083,
           35585167-35585840,35586134-35586224
          Length = 835

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 406 LHTQTSWEDDLYCRKLADIS*SGQKLRQWH 317
           L+ +TSWE + +C+ L   + + ++ + WH
Sbjct: 164 LYAETSWEKESWCKALRLAATADKEKKNWH 193


>01_05_0800 - 25347048-25347365,25347474-25347563
          Length = 135

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 507 HAEIGQRQSSHCRHEFVMVSDGTK-QTERDVWS 412
           H EI +    +C  E V+V+ GTK +   DVWS
Sbjct: 42  HPEIYEDAKVYCNGELVLVTGGTKPEYTVDVWS 74


>12_02_0192 + 15213905-15214282
          Length = 125

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 460 CNGFRWDEANRERRMEFGLHTQTSWEDD 377
           CNG RW E  R RRM      +  W  D
Sbjct: 5   CNGGRWWEGRRRRRMVGAPSLRQIWRPD 32


>06_01_0730 +
           5370575-5370761,5371395-5371438,5372057-5372204,
           5372289-5372397,5373349-5373863,5374571-5374808,
           5375296-5375560,5375740-5375844,5375950-5376015,
           5376562-5377020,5377267-5377464,5378149-5378211
          Length = 798

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 78  NDIPIIKFLFSPTFSLNVSISMSIHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQKLSIN 257
           N +P    ++SP +       M++ +FPT +   S     +++P GG+ L+A   K  ++
Sbjct: 600 NFMPYRHHIYSPVYVP----PMAMPNFPTNIPYPSNGNNYLQMPGGGSHLAAGGMKYGVS 655

Query: 258 Q 260
           Q
Sbjct: 656 Q 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,989,393
Number of Sequences: 37544
Number of extensions: 431329
Number of successful extensions: 1182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)