Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021366
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_24015| Best HMM Match : I-set (HMM E-Value=2.7e-21)                 30   1.6  
SB_7655| Best HMM Match : p450 (HMM E-Value=0)                         29   3.6  
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     28   6.3  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 283 WKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 381
           W+      L  DAI  +   IKKYQR F+ KDR
Sbjct: 482 WRPRPATLLDEDAIKKLKKDIKKYQRTFEIKDR 514


>SB_24015| Best HMM Match : I-set (HMM E-Value=2.7e-21)
          Length = 609

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 673 CNPCCRHKCRARR*GACRSKS-KLTCNVGF 587
           C    R KCR  R G CR+K+ +  C  GF
Sbjct: 296 CQELPRDKCRCNRGGVCRAKTYRCECTTGF 325


>SB_7655| Best HMM Match : p450 (HMM E-Value=0)
          Length = 580

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 503 AWEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF 610
           AWE   LE K ME +    H  D+   + TNI S F
Sbjct: 232 AWEVSKLEGKLMEDIGAAIHSKDVFLLLITNIISSF 267


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 592 GFDVAMEVYKMRWNGKPLHFLPFQNNGL 509
           G + AME  K+ WN     F+P+++ G+
Sbjct: 795 GLEKAMEKMKVEWNDMFFEFVPYRDTGV 822


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 503 AWEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF 610
           AWE   LERK M+ +    H  D    + TNI S F
Sbjct: 455 AWEVSKLERKLMKDVGTALHSRDEFSLLITNIISSF 490


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 123  LNVSISMSIHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQ 242
            L  S++ S+    T +       Q+  IPTGG  LS YF+
Sbjct: 1094 LKPSVNGSMQFHTTNVTSKDVTIQVTLIPTGGKELSVYFR 1133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,244,292
Number of Sequences: 59808
Number of extensions: 499460
Number of successful extensions: 1231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)