Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021366
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 574 EVYKMRWNGKP--LHFLPFQNNG 512
           EV+   WNG+P  +  LPF+NNG
Sbjct: 118 EVFSTVWNGRPVAIKVLPFENNG 140


>Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical
           protein C18E9.7 protein.
          Length = 855

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 132 SISMSIHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQKLSINQRRLNF 275
           S S+SI +  T L L+SK TQ+ ++       + Y  ++S N   +NF
Sbjct: 453 SYSISIRNASTELSLTSKTTQLEQVTAPIISSTVYPGQISSNSININF 500


>AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical
           protein R01B10.3 protein.
          Length = 98

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 125 ECINLNEYSQLSNKTQAVIQANANRSDPDW---RYTAVRIF 238
           +C+   + +++     ++ + NA R +P W   RYTA+ +F
Sbjct: 21  DCVKQRKVAEVPQIGYSLDELNAKREEPKWRVARYTAIAMF 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,016
Number of Sequences: 27780
Number of extensions: 372076
Number of successful extensions: 930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)