Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021366
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08470.1 68414.m00938 strictosidine synthase family protein s...    30   1.3  
At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family pro...    29   2.9  
At5g22020.1 68418.m02562 strictosidine synthase family protein s...    29   3.9  
At5g08540.1 68418.m01016 expressed protein similar to unknown pr...    29   3.9  
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH...    28   5.1  
At4g27010.1 68417.m03885 expressed protein  ; expression support...    28   6.8  
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS...    28   6.8  
At2g36470.1 68415.m04476 expressed protein                             27   9.0  
At2g19330.1 68415.m02255 leucine-rich repeat family protein cont...    27   9.0  
At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    27   9.0  

>At1g08470.1 68414.m00938 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 390

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 507 GRPLFWNGRKWSGFPFHLIL*TSIATSKPTL 599
           GR LFWNG +W+ F +     + +   KP+L
Sbjct: 89  GRILFWNGTRWTDFAYTSNNRSELCDPKPSL 119


>At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family
           protein similar to carbamoylphosphate synthetase
           GI:6552726 from [Medicago sativa]; contains Pfam
           profiles PF02786: Carbamoyl-phosphate synthase L chain
           ATP binding domain, PF00289: Carbamoyl-phosphate
           synthase L chain N-terminal domain, PF02787:
           Carbamoyl-phosphate synthetase large chain
           oligomerisation domain
          Length = 1187

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 404 EAKLHTSLSVCFVPSETITNSCLQ 475
           +A +H+  S C +P++TI  SCLQ
Sbjct: 888 QAGVHSGDSACMLPTQTIPASCLQ 911


>At5g22020.1 68418.m02562 strictosidine synthase family protein
           similar to SP|P15324 Strictosidine synthase precursor
           (EC 4.3.3.2) {Rauvolfia mannii}; contains Pfam profile
           PF03088: Strictosidine synthase
          Length = 395

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 507 GRPLFWNGRKWSGFPFHLIL*TSIATSKPT 596
           GR LFW+G KW  F +     + I   KP+
Sbjct: 95  GRVLFWDGEKWIDFAYTSSNRSEICDPKPS 124


>At5g08540.1 68418.m01016 expressed protein similar to unknown
           protein (pir||T27191)
          Length = 346

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 47  FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSN 163
           F    + R Y R+  ++ PF PDL  + I+L + S L++
Sbjct: 186 FNMEEILRKYIRYALNEKPFNPDLVADLIHLRKASGLND 224


>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
           (CHX16) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 847

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 111 PTFSLNVSISMSIHSFPTRLKLSSKRTQIVRIPTGGTLL 227
           P+  L  S S   + +PTRLK    R   V++ TGG LL
Sbjct: 77  PSTGLGQSYSFRFNKYPTRLKYELYRDS-VQLITGGILL 114


>At4g27010.1 68417.m03885 expressed protein  ; expression supported by
            MPSS
          Length = 2535

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 54   FHLYVEPINDIPIIKFLF 107
            F+LY +PIN++P+  F F
Sbjct: 1927 FYLYDDPINEVPVFSFNF 1944


>At1g31630.1 68414.m03884 MADS-box family protein similar to
           MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
          Length = 339

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 86  PNHKVPFQPDLFVECINLNEYSQL 157
           PNH+ PFQ D F+E +    Y Q+
Sbjct: 267 PNHQYPFQDDPFMEMLMEYPYEQV 290


>At2g36470.1 68415.m04476 expressed protein
          Length = 327

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 200 SDPDWRYTAVRIFSKTQHKSTKAQFSALGK 289
           S   WR +    FS T   +TKAQFS +G+
Sbjct: 146 SSSSWRVSKTERFSGTCWLTTKAQFSDVGR 175


>At2g19330.1 68415.m02255 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 380

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +3

Query: 129 VSISMSIHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQKLSINQRRLNFRPLESMPDIS- 305
           VS   SI    +  +L++   +++R+P          +KLSIN  +L   P+      S 
Sbjct: 143 VSFPKSIQHCRSLEELNANFNKLIRLPDSIGFELTNLRKLSINSNKLISLPISITHLTSL 202

Query: 306 --LDA*CHCLNFWPD 344
             LDA  +CL   PD
Sbjct: 203 RVLDARLNCLMILPD 217


>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 444 HLKPL-QIHVCNDYSAFDQSQHGRPLFW 524
           H  PL Q+   + YS +D S HG PL+W
Sbjct: 59  HPHPLHQLLYYSVYSNWDSSVHGPPLYW 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,201
Number of Sequences: 28952
Number of extensions: 351202
Number of successful extensions: 961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)