Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021364
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    28   1.1  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    28   1.5  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   4.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   6.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   7.9  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.9  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   7.9  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 HTTQRSVSASERTQIHAARRLKPSSSYI 325
           H+T +S+S  ER +IH     KP   Y+
Sbjct: 536 HSTWKSISLVERARIHYLTAFKPPKQYL 563


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = -2

Query: 325 PYRIRLLLYHFCLQTRKHERNERSKI---NTDIN*KEKL*NEQNFLMINKRHI-RCILCR 158
           P R+R L +H+ +QT K+      K+     ++  + +  +E++FL  NK  +  CI C 
Sbjct: 419 PNRLRSLRWHYGIQTAKNPIEVLRKLCEALLELGARFRPCDEESFLKENKYKVFSCITCH 478

Query: 157 TYP-FSTIKLHNV 122
             P +  I+L ++
Sbjct: 479 NSPVYLVIELFSI 491


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 221 FFFLINVCINFGSFVSFVF-TCLQTKMVKEKPNSIR 325
           F   +++C  F SF++F+F T  Q K+ +  P   R
Sbjct: 89  FLSFLSICFLFISFLNFIFSTRFQNKLYRTLPQDKR 124


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 181 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 83
           HIR +L R Y FS       ++ S+++NN   I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 453 NPVVGPSRRRHQQDLHTTQRSVSASERTQIHAARR 349
           NPVV   R R +++      SV  SE TQ+  A++
Sbjct: 329 NPVVKRKRGRPRKNKLEIGNSVQTSEATQVKGAKK 363


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 495 DRRLLFRLYSPARXNPVVGPSRRRHQQDLHTTQRSVSASERTQI-HAARRLKPSSSYILI 319
           DR++   L +  R   V GP+R  +  +L   +       +++I H+ R+L+  + ++ I
Sbjct: 359 DRKVSLSLVNGPRSFVVSGPARSLYGLNLSLRKEKADGQNQSRIPHSKRKLRFINRFLSI 418

Query: 318 ELGF 307
            + F
Sbjct: 419 SVPF 422


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 654 RPMSLESSHSGSSWVTVIT*PLFGVCVLGS 565
           R  S+   H+GSS+V ++    FG C++ S
Sbjct: 475 RASSVSIKHNGSSYVVLLAGKPFGGCLIWS 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,536
Number of Sequences: 5004
Number of extensions: 52761
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)