Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021364
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763...    29   2.7  
06_01_0908 - 7006160-7007488                                           28   6.2  
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18...    28   6.2  
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006...    28   8.2  
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578...    28   8.2  

>03_04_0123 +
           17475020-17475243,17475367-17475445,17476295-17476393,
           17476499-17476682,17477139-17477206,17477530-17477787,
           17477996-17478049,17478149-17478355,17478507-17478633,
           17479409-17479575
          Length = 488

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -3

Query: 438 PSRRRHQQDLHTTQRSVSASERTQIHAARRLKPSSSYILIE 316
           PS ++H       Q+ +  S++ Q+HA ++L+PS++ +L +
Sbjct: 264 PSPQQHLTAQQHRQKLMQTSQQQQLHAQQQLRPSAAGMLAQ 304


>06_01_0908 - 7006160-7007488
          Length = 442

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 525 GVIGKLGRCLGVFENREHKHRTEVML*L*PKNYPSGRIQDSWDVRRQWSLIDDALAQL 698
           G++GK  RC+G       + RT+  L   P +    R +  W  R + SLI   L  L
Sbjct: 2   GIMGKWERCIGGRSKPMSRQRTQEALRRAPGDSEVDRKEKPWAARWKASLIATCLVAL 59


>04_01_0009 -
           178579-178638,179151-179246,179504-179565,180181-180245,
           181271-181363,181489-181592,182070-182153,182223-182303,
           182829-182880,183048-183119,183411-183486,183568-183680,
           184056-184203,184295-184372,184511-184640,184733-184923,
           187039-187099,187201-187371
          Length = 578

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 567 SRILQDIVLVSRSLRLPQVPPHRSDRRLL 481
           +R+LQD V+  R + LP+ PP   ++ +L
Sbjct: 56  TRMLQDTVIPERPMYLPEYPPQEPEQGVL 84


>05_04_0224 -
           19198722-19198835,19198947-19199436,19200478-19200641,
           19202534-19202632,19204069-19204175,19204278-19204401,
           19205113-19205242,19205314-19205433,19205861-19206002,
           19207243-19207326,19207651-19207742,19207855-19207944,
           19208057-19208136,19208312-19208451,19208587-19209067
          Length = 818

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 465 PARXNPVVGPSRRRHQQD---LHTTQRSVSASERTQIHAARRLKPSSS 331
           P R  P   P R  H      + TT+R   +  R ++HAAR   PS++
Sbjct: 21  PLRLAPTHPPLRLHHDGGHLLVGTTRRQAPSPRRRRLHAARASAPSAA 68


>01_06_0058 -
           26056334-26056630,26057063-26057365,26057748-26057891,
           26057947-26058702,26058844-26059088,26059177-26060079,
           26060163-26060225,26060537-26061025,26061211-26061291,
           26061801-26061956,26062371-26062416
          Length = 1160

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 540 VSRSLRLPQVPPHRSDRRLLFRLYSPARXNPVVGPSRRRHQQDLHTTQR-SVSASERTQI 364
           +S    L + P + +  RL  +L         + P +++ + D   TQR S++  +R ++
Sbjct: 92  ISLDNELVRAPTNETKERLQSKLARAREKYATLTPEQKQAKVDQRRTQRQSLTKEQRLEL 151

Query: 363 HAARRLKPSS 334
           +A RR+   S
Sbjct: 152 NARRRVARQS 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,728
Number of Sequences: 37544
Number of extensions: 338547
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)