Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021364
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   36   0.024
SB_26246| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 296 MVKEKPNSIRIYDDEGFRRRAACICVRSDAXTERCVVCRS 415
           M+K      R YD++G+ +RA C+C R++   E  +V  S
Sbjct: 83  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSS 122


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 296 MVKEKPNSIRIYDDEGFRRRAACICVRSDAXTERCVVCRS 415
           M+K      R YD++G+ +RA C+C R++   E  +V  S
Sbjct: 48  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSS 87


>SB_26246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = -3

Query: 474 LYSPARXNPVVGPSRRRHQQDLHTTQRSVSASERTQIHAARRLKPSSSYILIELGFSFTI 295
           L +PA  NP+  P  RRHQ    T QR +   E T +  + R +      L E GF   +
Sbjct: 52  LDAPALKNPIALPFMRRHQL---TPQRIMGVVE-TVMQESPRGRVQFQRYLGERGFELNV 107

Query: 294 FVCKHVNT 271
              +H NT
Sbjct: 108 VSREHANT 115


>SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 303 FTIFVCKHVNTNETNDPKLIQTLIKKKN 220
           FT++V     T   + PKL+QT +K KN
Sbjct: 848 FTLYVVMFFGTEYVDQPKLVQTQLKDKN 875


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,655
Number of Sequences: 59808
Number of extensions: 417565
Number of successful extensions: 1233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)