Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021364
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    31   0.79 
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    30   1.4  
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL137227-10|CAB76717.1|  391|Caenorhabditis elegans Hypothetical...    29   4.2  
AL132848-6|CAB76731.1|  391|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        28   5.6  
Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 510 VLEEAGVIGKLGRCLGVFENREHKHRTEVML 602
           ++EEAGV   + + +G+F++   KHRT+V L
Sbjct: 74  LMEEAGVRATILKKIGMFQDDVRKHRTQVFL 104



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 293 KMVKEKPNSIRIYDDEGFRRRAACICVR 376
           K  + + N +R+ D +GFR RAA +C++
Sbjct: 6   KSRESERNKVRLRDTDGFRIRAAALCIK 33


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
 Frame = +2

Query: 542 RTMSWSIREPRTQTPNRGY---VMTVTQELPE-WEDSRLMGRK-KAMV 670
           RT+ W  ++ RT+T  RG+   V+ VT++L E ++D +   R+ KA +
Sbjct: 313 RTLEWGEKKDRTETTQRGWTKIVLFVTEQLKEGFQDEQKRARRIKAQI 360


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 148 FSTIKLHNVHKKS--NYNNNKTTIRAMF*L*LAFDRIFQA-HVE 26
           ++T KL N+HKKS  N+NN+K  +  +      FD +F   HV+
Sbjct: 71  YNTTKLDNIHKKSIFNFNNSKKCLTLL----TRFDDLFSIDHVD 110


>AL137227-10|CAB76717.1|  391|Caenorhabditis elegans Hypothetical
           protein F58D5.3 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 375 RTQIHAARRLKPSSSY---ILIELGFSFTIFVCKHVNTNETNDPKL 247
           R+QI AA    PSS+    +LI   F     +C H    +  DPKL
Sbjct: 185 RSQIRAALTPHPSSAIRAELLIPEEFRKDFLICVHTKQTQLGDPKL 230


>AL132848-6|CAB76731.1|  391|Caenorhabditis elegans Hypothetical
           protein F58D5.3 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 375 RTQIHAARRLKPSSSY---ILIELGFSFTIFVCKHVNTNETNDPKL 247
           R+QI AA    PSS+    +LI   F     +C H    +  DPKL
Sbjct: 185 RSQIRAALTPHPSSAIRAELLIPEEFRKDFLICVHTKQTQLGDPKL 230


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
           protein F39B2.4b protein.
          Length = 1589

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 246 LILDRSFRSCLRVCKQKW 299
           LI+   FR C R+C++KW
Sbjct: 131 LIMTSDFRLCSRICQEKW 148


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
           protein F39B2.4a protein.
          Length = 1587

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 246 LILDRSFRSCLRVCKQKW 299
           LI+   FR C R+C++KW
Sbjct: 131 LIMTSDFRLCSRICQEKW 148


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 246 LILDRSFRSCLRVCKQKW 299
           LI+   FR C R+C++KW
Sbjct: 131 LIMTSDFRLCSRICQEKW 148


>Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical
           protein C09F12.2 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 405 TTQRSVSASERT-QIHAARRLKPSSSYILIELGFSFTIFV 289
           + +R +S S R+   +A R  KP+++YI   L F+F IF+
Sbjct: 64  SVKRQISGSIRSIGAYAGRLAKPANAYIRWNLLFTFLIFL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,838
Number of Sequences: 27780
Number of extensions: 304961
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)