Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021364
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.5  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 166 LCRTYPFSTIKLHNVHKKSNYNNN 95
           L   Y +S    +N +  +NYNNN
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNN 108


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 166 LCRTYPFSTIKLHNVHKKSNYNNN 95
           L   Y +S    +N +  +NYNNN
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNN 108


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 133 LHNVHKKSNYNNN 95
           +HN + K NYNNN
Sbjct: 89  IHNNNYKYNYNNN 101


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 133 LHNVHKKSNYNNN 95
           +HN + K NYNNN
Sbjct: 89  IHNNNYKYNYNNN 101


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 133 LHNVHKKSNYNNN 95
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 133 LHNVHKKSNYNNN 95
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 133 LHNVHKKSNYNNN 95
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 133 LHNVHKKSNYNNN 95
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 145 STIKLHNVHKKSNYNNN 95
           S++    +H  +NYNNN
Sbjct: 83  SSLSNKTIHNNNNYNNN 99


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 145 STIKLHNVHKKSNYNNN 95
           S++    +H  +NYNNN
Sbjct: 83  SSLSNKTIHNNNNYNNN 99


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 145 STIKLHNVHKKSNYNNN 95
           S++    +H  +NYNNN
Sbjct: 316 SSLSNKTIHNNNNYNNN 332



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 142 TIKLHNVHKKSNYNNN 95
           TI  +N +  +NYNNN
Sbjct: 322 TIHNNNNYNNNNYNNN 337


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 133 LHNVHKKSNYNNNK 92
           +HN +  +NYNN K
Sbjct: 312 IHNNNNYNNYNNKK 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,855
Number of Sequences: 438
Number of extensions: 4133
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)