Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021363
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 177 2e-45
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 97 3e-21
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 93 4e-20
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 92 8e-20
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 91 1e-19
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 89 7e-19
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 85 1e-17
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 83 4e-17
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 82 8e-17
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 79 6e-16
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 79 6e-16
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 77 2e-15
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 73 4e-14
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 70 3e-13
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 68 1e-12
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 66 3e-12
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 64 2e-11
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 63 3e-11
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 63 4e-11
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 58 9e-10
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 38 0.001
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 33 0.029
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.16
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.16
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.36
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.47
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.83
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 29 0.83
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 1.1
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.3
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 3.3
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 4.4
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 4.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.8
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 5.8
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 5.8
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 7.7
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 7.7
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 177 bits (430), Expect = 2e-45
Identities = 108/226 (47%), Positives = 134/226 (59%), Gaps = 5/226 (2%)
Frame = +1
Query: 4 TRIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR 183
T IH +GEPI RE+EE +L VGYDDIGGCR+Q+AQI+E+VELPLRHP LFK+IG+KPPR
Sbjct: 200 TIIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPR 259
Query: 184 GILMYGPPGTGKTLIARAVANETGLSSF*LMDRRSCLSWRENRSQTSVXXXXXXXXXXXX 363
GILMYGPPGTGKTL+ARAVANETG + F L++ +S S++++
Sbjct: 260 GILMYGPPGTGKTLMARAVANETG-AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSP 318
Query: 364 XXXXXXXXXXHQRERKPTVKWKDVSFHSY*RLWMA*XXXXXXXXXXXXXAELHRPGA--A 537
+R+ T +V +L + A +RP +
Sbjct: 319 AIIFIDEIDSIAPKREKTN--GEVERRVVSQL-LTLMDGMKARSNVVVMAATNRPNSIDP 375
Query: 538 ALRAVRPRDRHRH---PRANGRLEILRIHTQNMKLGDDVDLEQIAA 666
ALR DR P GRLEILRIHT+NMKL DDVDLEQIAA
Sbjct: 376 ALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAA 421
Score = 157 bits (381), Expect = 1e-39
Identities = 75/85 (88%), Positives = 83/85 (97%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 434
AFFFLINGPEIMSK+AGESESNLRKAFEEA+KNSPAIIFIDE+D+IAPKREKT+GEVERR
Sbjct: 284 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERR 343
Query: 435 IVSQLLTLMDGMKKSSHVIVMAATN 509
+VSQLLTLMDGMK S+V+VMAATN
Sbjct: 344 VVSQLLTLMDGMKARSNVVVMAATN 368
Score = 77.4 bits (182), Expect = 2e-15
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEV--E 428
A F + GPE++S GESESN+R F++A +P ++F+DELD+IA R + G+
Sbjct: 557 ANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGG 616
Query: 429 RRIVSQLLTLMDGMKKSSHVIVMAATN 509
R+V+QLLT MDG+ +V V+ ATN
Sbjct: 617 DRVVNQLLTEMDGVNSKKNVFVIGATN 643
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/71 (45%), Positives = 48/71 (67%)
Frame = +1
Query: 37 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 216
RE E N V ++DIGG + +++E V++P+ + F GV P +G+L +GPPGTG
Sbjct: 485 RETVVEVPN-VRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTG 543
Query: 217 KTLIARAVANE 249
KTL+A+A+ANE
Sbjct: 544 KTLLAKAIANE 554
Score = 56.8 bits (131), Expect = 3e-09
Identities = 27/59 (45%), Positives = 35/59 (59%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTAASRFCAYTPRT*S*ETTSILNRSQQESHGHL 685
RPNSIDPALRRFGRFDRE+D+GIP+ T + L + E+HG++
Sbjct: 369 RPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYV 427
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTA 592
G RP+ IDPAL R GR D+ I + +P+ A
Sbjct: 640 GATNRPDQIDPALMRPGRLDQLIYVPLPDEEA 671
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 96.7 bits (230), Expect = 3e-21
Identities = 45/82 (54%), Positives = 60/82 (73%)
Frame = +3
Query: 264 FLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVS 443
F I+GP ++ K GE+ES LRK FE+A + P+IIFIDE+DA+APKR + E E R V+
Sbjct: 342 FTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAESRAVA 401
Query: 444 QLLTLMDGMKKSSHVIVMAATN 509
LLTL+DGM + V+V+AATN
Sbjct: 402 TLLTLLDGMANAGKVVVIAATN 423
Score = 88.2 bits (209), Expect = 1e-18
Identities = 37/69 (53%), Positives = 51/69 (73%)
Frame = +1
Query: 61 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
+AV + IGG + Q+AQI+++VELP ++P LFK + PPRG+L+YGPPGTGKT++ RAV
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAV 333
Query: 241 ANETGLSSF 267
A E F
Sbjct: 334 AAEANAQVF 342
Score = 78.6 bits (185), Expect = 8e-16
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +1
Query: 37 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 216
RE E+ N V + DIGG + ++KE VE PL H F +GV+PP+G+L+YGPPG
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCS 594
Query: 217 KTLIARAVANETGLS 261
KT+ A+A+A ETGL+
Sbjct: 595 KTITAKAIATETGLN 609
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/83 (39%), Positives = 54/83 (65%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
F + GPE+ K GESE +R+ F++A + SP++IF DE+DA+ R + + R+V
Sbjct: 610 FIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANRGEDNS--SDRVV 667
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
+ LL +DG++ +V+V+AATN
Sbjct: 668 AALLNELDGIEALRNVLVLAATN 690
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTA 592
RPNSID ALRR GR ++EI+IGIP+++A
Sbjct: 424 RPNSIDEALRRPGRLEKEIEIGIPDKSA 451
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP 580
RP+ IDPAL R GR DR + +G P
Sbjct: 691 RPDMIDPALMRPGRLDRLLYVGPP 714
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIAAR 669
P R +I++I + MK +DVDL+ IA +
Sbjct: 714 PNFEARKQIVKIQAEKMKFAEDVDLDLIAEK 744
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 92.7 bits (220), Expect = 4e-20
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +1
Query: 19 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 198
D +P+ + + Y DIGG Q+ +IKE VELPL HP L++ +G+KPP+G+++Y
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILY 231
Query: 199 GPPGTGKTLIARAVANET 252
G PGTGKTL+A+AVAN+T
Sbjct: 232 GAPGTGKTLLAKAVANQT 249
Score = 58.4 bits (135), Expect = 9e-10
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVER- 431
A F + G E++ K G+ +R+ F A+++SP+I+FIDE+DAI KR ER
Sbjct: 251 ATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAERE 310
Query: 432 --RIVSQLLTLMDGMKKSSHVI-VMAATN 509
R + +LL +DG S I V+ ATN
Sbjct: 311 IQRTMLELLNQLDGFDTSQRDIKVIMATN 339
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 574 HPRANGRLEILRIHTQNMKLGDDVDLEQI 660
+P + +I IHT M LG+DV+LE++
Sbjct: 362 NPDEATKRKIFTIHTSKMNLGEDVNLEEL 390
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP-ERTAASRFCAYTPR 622
R + +DPAL R GR DR+I P E T F +T +
Sbjct: 340 RISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSK 378
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 91.9 bits (218), Expect = 8e-20
Identities = 36/60 (60%), Positives = 52/60 (86%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
Y+ +GG KQ+ +IKE++ELP++HP LF+++G+ P+GIL+YGPPGTGKTL+ARAVA+ T
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHT 203
Score = 56.8 bits (131), Expect = 3e-09
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG-----EV 425
F ++G E++ K GE +R+ F A +++P+IIF+DE+D+I R + G EV
Sbjct: 207 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEV 266
Query: 426 ERRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R ++ +LL +DG + + ++ V+ ATN
Sbjct: 267 QRTML-ELLNQLDGFEATKNIKVIMATN 293
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIAARVS 675
P A R EILRIH+++M L +DL+ IA +++
Sbjct: 317 PSAEARAEILRIHSRSMNLTRGIDLKSIAEKMN 349
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTA 592
R + +DPAL R GR DR+I+ P A
Sbjct: 294 RIDILDPALLRPGRIDRKIEFPPPSAEA 321
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 91.1 bits (216), Expect = 1e-19
Identities = 37/62 (59%), Positives = 50/62 (80%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V Y D+GGC++Q+ +++E+VELPL P F +G+ PP+GI++YGPPGTGKTL ARAVAN
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVAN 235
Query: 247 ET 252
T
Sbjct: 236 RT 237
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE 428
A F + G E++ K GE +R+ FE A IIF DE+DAI R + G+ E
Sbjct: 239 ATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNE 298
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +L+T +DG ++ V+ ATN
Sbjct: 299 VQRTMLELITQLDGFDPRGNIKVLFATN 326
Score = 35.9 bits (79), Expect = 0.005
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
RPN++D AL R GR DR+++ G+P+
Sbjct: 327 RPNTLDEALMRPGRIDRKVEFGLPD 351
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIA 663
P GR ILRIH ++M + D+ E IA
Sbjct: 350 PDLEGRAHILRIHAKSMAIDKDIRWELIA 378
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 88.6 bits (210), Expect = 7e-19
Identities = 33/65 (50%), Positives = 53/65 (81%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ + +GG +Q+ +++E++ELPL++P LF +G+KPP+G+L+YGPPGTGKTL+ARAVA
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAA 188
Query: 247 ETGLS 261
G++
Sbjct: 189 SLGVN 193
Score = 50.0 bits (114), Expect = 3e-07
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE-R 431
F + I+ K GES +R+ F A ++ P +IF+DE+DAI +R E T + E +
Sbjct: 194 FLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQ 253
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
R + +LL MDG ++ ATN
Sbjct: 254 RTLMELLNQMDGFDYLGQTKIIMATN 279
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP 580
RP+++DPAL R GR DR+I+I +P
Sbjct: 280 RPDTLDPALLRPGRLDRKIEIPLP 303
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQI 660
P GR+EIL+IH + + ++D E +
Sbjct: 303 PNEVGRMEILKIHLEKVSKQGEIDYEAL 330
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 84.6 bits (200), Expect = 1e-17
Identities = 40/87 (45%), Positives = 58/87 (66%)
Frame = +3
Query: 249 NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVE 428
++A F I GPE+++K GESE +R+ F A +SP +IF DELDA+ P+R+ + E
Sbjct: 550 SKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEAS 609
Query: 429 RRIVSQLLTLMDGMKKSSHVIVMAATN 509
R+V+ LLT +DG+ S V V+AATN
Sbjct: 610 SRVVNTLLTELDGLSDRSGVYVIAATN 636
Score = 83.0 bits (196), Expect = 4e-17
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
F I+ P I+S ++GESE +R+ FEEA +P ++FIDE+DA+ PKRE E+ERRIV
Sbjct: 236 FISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIV 295
Query: 441 SQLLTLMDGMK----KSSHVIVMAATN 509
+Q LT MD + V+V+ ATN
Sbjct: 296 AQFLTCMDELSFEKTDGKPVLVIGATN 322
Score = 79.0 bits (186), Expect = 6e-16
Identities = 31/75 (41%), Positives = 51/75 (68%)
Frame = +1
Query: 34 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 213
K E E + + DIGG + ++ E+V +P++HP +++ G+ PPRG+L++GPPG
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGC 219
Query: 214 GKTLIARAVANETGL 258
GKT++A A+ANE G+
Sbjct: 220 GKTMLANALANELGV 234
Score = 68.5 bits (160), Expect = 8e-13
Identities = 26/76 (34%), Positives = 50/76 (65%)
Frame = +1
Query: 25 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 204
+P + E + V +++IG + +++ + P++ P L++++G+ P G+L++GP
Sbjct: 475 QPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGP 534
Query: 205 PGTGKTLIARAVANET 252
PG GKTL+A+AVANE+
Sbjct: 535 PGCGKTLLAKAVANES 550
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTAASR 601
G RP+S+D ALRR GRFDREI + +P + A +
Sbjct: 319 GATNRPDSLDSALRRAGRFDREICLTVPSQDAREK 353
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
RP+ IDPA+ R GR D+ + + +P+
Sbjct: 637 RPDIIDPAMLRPGRLDKTLLVDLPD 661
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 83.0 bits (196), Expect = 4e-17
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V Y D+GG Q +++E VELPL L++ IG+ PPRG+L+YGPPGTGKT++ +AVAN
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 190
Query: 247 ET 252
T
Sbjct: 191 ST 192
Score = 67.7 bits (158), Expect = 1e-12
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE 428
A F + G E + K GE +R F A +N+PAIIFIDE+DAIA KR +T + E
Sbjct: 194 ANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADRE 253
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+RI+ +LLT MDG + ++V V+ ATN
Sbjct: 254 VQRILIELLTQMDGFDQGANVKVIMATN 281
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREID 568
R +++DPAL R GR DR+I+
Sbjct: 282 RADTLDPALLRPGRLDRKIE 301
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 81.8 bits (193), Expect = 8e-17
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
F++ G + +SK GE+E LR FEEA P+IIF DE+D +AP R ++ IV
Sbjct: 333 FYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIV 392
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
S LL LMDGM+ VI++ ATN
Sbjct: 393 STLLALMDGMESRGQVIIIGATN 415
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Frame = +1
Query: 61 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
+++ ++ +GG + Q+KEMV LPL +P +F+ ++PPRG+L +GPPGTGKTL+ARA+
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARAL 320
Query: 241 A----NETGLSSF*LMDRRSCLS 297
A +E SF + CLS
Sbjct: 321 AAACSSENKKVSFYMRKGADCLS 343
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTAASR 601
G RP+++DPALRR GRFDRE +P+R A +
Sbjct: 412 GATNRPDAVDPALRRPGRFDREFYFPLPDRDARKK 446
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 79.0 bits (186), Expect = 6e-16
Identities = 39/83 (46%), Positives = 50/83 (60%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
FFL G + +SK GE+E LR FEEA + P+IIF DE+D +AP R + IV
Sbjct: 439 FFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIV 498
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
S LL LMDG+ V+V+ ATN
Sbjct: 499 STLLALMDGLDTRGQVVVIGATN 521
Score = 74.1 bits (174), Expect = 2e-14
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +1
Query: 13 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGIL 192
H D + I+ + + ++ IGG + Q+KEMV LPL +P +F + + PPRG+L
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
Query: 193 MYGPPGTGKTLIARAVANETGLS----SF*LMDRRSCLS 297
+GPPGTGKTL+AR +A SF L CLS
Sbjct: 411 FHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLS 449
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTA 592
G RPN +DPALRR GRFDRE +P + A
Sbjct: 518 GATNRPNDLDPALRRPGRFDREFYFPLPNKQA 549
Score = 32.3 bits (70), Expect = 0.067
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +3
Query: 282 EIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 461
E++ S L K F EA KN+P+IIFI+ + EK +S L L+
Sbjct: 742 ELLMDTTTSPRSLLTKIFSEARKNAPSIIFINNV-------EKWPSLFSHSFLSMFLLLL 794
Query: 462 DGMKKSSHVIVMAATN 509
D + V+++ N
Sbjct: 795 DSISPLEPVMLLGFAN 810
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 79.0 bits (186), Expect = 6e-16
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVERR 434
F I GPE+++ GESE+N+R FE+A +SP +IF DELD+IAP R G V R
Sbjct: 716 FVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGNVMDR 775
Query: 435 IVSQLLTLMDGMKK--SSHVIVMAATN 509
+VSQLL +D + K + +V V+ ATN
Sbjct: 776 VVSQLLAELDSISKDNNKYVFVIGATN 802
Score = 74.1 bits (174), Expect = 2e-14
Identities = 33/64 (51%), Positives = 46/64 (71%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DDIGG + +++ ++LPL+ P LF G+KP G+L+YGPPGTGKTL+A+AVA
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVAT 710
Query: 247 ETGL 258
E L
Sbjct: 711 ELSL 714
Score = 34.3 bits (75), Expect = 0.017
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGI--PERTAASRFCAYTPRT*S*ETTSILNRSQQE 670
G RP+ +DP+L R GRFD+ + +GI E + AS A T +T + T LN +
Sbjct: 799 GATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALT-KTFKLDETIDLNEIAKN 857
Query: 671 SH 676
H
Sbjct: 858 CH 859
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = +3
Query: 264 FLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVS 443
F I+ E A E+ L + K+ AIIF+ +LD ++ ++ + + +
Sbjct: 451 FTISSYEFADATADHLEAKLDMFVQNVVKSPCAIIFVKDLDVLSISSDEGNIVPGSKSIQ 510
Query: 444 QLLTLMDGMKKSSHVIVMAAT 506
LL+ +D +K ++ T
Sbjct: 511 ILLSKIDLVKSPQGRYIVIGT 531
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 77.4 bits (182), Expect = 2e-15
Identities = 32/60 (53%), Positives = 45/60 (75%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
Y DIGG KQ+ ++ E + LP++ F+ +GVKPP+G LM+GPPGTGKTL+ARA A ++
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQS 243
Score = 63.3 bits (147), Expect = 3e-11
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Frame = +3
Query: 237 CC**NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR---E 407
C + A F + P+++ G+ +R AF A + SPAIIFIDELDAI KR E
Sbjct: 239 CAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSE 298
Query: 408 KTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 509
K +R + +LL +DG V V+AATN
Sbjct: 299 KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 332
Score = 31.9 bits (69), Expect = 0.089
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIA 663
P R+ ILRIH++ M + DD++ E++A
Sbjct: 356 PNEEARVGILRIHSRKMAIDDDINWEELA 384
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTA 592
R +++DPAL R GR DR+++ +P A
Sbjct: 333 RVDTLDPALLRSGRLDRKLEFPLPNEEA 360
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 72.9 bits (171), Expect = 4e-14
Identities = 33/82 (40%), Positives = 49/82 (59%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
F I GPE++ K G+SE +R F A P ++F DE D++AP+R + V R+V
Sbjct: 668 FISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVV 727
Query: 441 SQLLTLMDGMKKSSHVIVMAAT 506
+Q+LT MDG + V ++AAT
Sbjct: 728 NQILTQMDGAESLDGVYIVAAT 749
Score = 51.2 bits (117), Expect = 1e-07
Identities = 20/76 (26%), Positives = 48/76 (63%)
Frame = +1
Query: 19 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 198
D P++ + + +++ + DI G ++ +++++E P+++ ++K ++ P GIL++
Sbjct: 587 DFVPLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLF 646
Query: 199 GPPGTGKTLIARAVAN 246
G PG GKT +A A+++
Sbjct: 647 GYPGCGKTYLASAISS 662
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP 580
RP+ IDPAL R GR D+ I +P
Sbjct: 751 RPDMIDPALLRPGRLDKLIFCDLP 774
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 70.1 bits (164), Expect = 3e-13
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
FF I+ +++SK GESE +R+ FE A + P+IIFIDE+D++ R + E RRI
Sbjct: 190 FFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIK 249
Query: 441 SQLLTLMDGM-KKSSHVIVMAATN 509
++ L M+G+ K S V+V+ ATN
Sbjct: 250 TEFLVQMNGVGKDESGVLVLGATN 273
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/67 (50%), Positives = 43/67 (64%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DDI G +KE V LP++ P LF G KP GIL+YGPPGTGK+ +A+AVA
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVAT 184
Query: 247 ETGLSSF 267
E G + F
Sbjct: 185 EAGSTFF 191
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/74 (45%), Positives = 50/74 (67%)
Frame = +1
Query: 46 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL 225
EE A+N V + D+ G + +++E+V+ LR P+ F +G K PRG+L+ GPPGTGKT+
Sbjct: 258 EERAIN-VRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 226 IARAVANETGLSSF 267
+ARAVA E + F
Sbjct: 316 LARAVAGEANVPFF 329
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
FF ++G + G +R+ F A K +P+IIFIDELDAI KR R+ +
Sbjct: 328 FFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAAHMRQTL 387
Query: 441 SQLLTLMDGMKKS---SH-VIVMAATN 509
+QLL +DG K+ +H V+ + ATN
Sbjct: 388 NQLLVDLDGFSKNEDLAHPVVFIGATN 414
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 562 DRHRH---PRANGRLEILRIHTQNMKLGDDVDLEQIAARVS 675
DRH H P GRL IL HT+++ LG DVDL IA S
Sbjct: 430 DRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTS 470
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 449 IDAYGWHEEVV-PRDRDGGHERPNSIDPALRRFGRFDREIDIGIPE 583
+D + +E++ P G P S+DPAL R GRFDR I + +P+
Sbjct: 394 LDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPD 439
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 66.5 bits (155), Expect = 3e-12
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 10/91 (10%)
Frame = +3
Query: 267 LINGPEIMSKLAGESESNLRKAFEEADK--------NSPAIIFIDELDAIAPKREKTHGE 422
++NGPEI++K G+SE N+RK F +A++ + II DELDAI KR + G+
Sbjct: 335 IVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGD 394
Query: 423 --VERRIVSQLLTLMDGMKKSSHVIVMAATN 509
V ++V+QLL MDG+ + ++++V+ TN
Sbjct: 395 TGVGDQVVNQLLAKMDGVDQLNNILVIGMTN 425
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 82 IGGCRKQLAQI-KEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
IGG + + I + L P + + +G+ +GIL+YGPPGTGKTLIAR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQI 324
Score = 32.7 bits (71), Expect = 0.051
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 4/34 (11%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMK----LGDDVDLEQIAA 666
P +GRL+IL+IHT M L +DVD+E++A+
Sbjct: 449 PDEHGRLQILKIHTSRMASNGILENDVDMEELAS 482
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +3
Query: 258 FFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI 437
F L++ ++ +++ + FE++ K+ ++I +DE++ I +
Sbjct: 613 FVKLVSAESMVGMNENARVAHVNRVFEDSYKSPLSVIVVDEIERII-DWVPIGPRFSNTL 671
Query: 438 VSQLLTLMDGMKKSSH-VIVMAATNGRTPSTR 530
+ L+ L H ++++A T+ RT +R
Sbjct: 672 LQTLMVLFKKQPPKGHRLLILATTSERTMLSR 703
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 64.1 bits (149), Expect = 2e-11
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREK--THGEVERR 434
F ++G E + G S +R F A KN+P IIFIDE+DAI R + G + R
Sbjct: 357 FLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDER 416
Query: 435 --IVSQLLTLMDGMKKSSHVIVMAATN 509
++QLL MDG S H++V A TN
Sbjct: 417 ESTLNQLLVEMDGFTSSEHIVVFAGTN 443
Score = 58.0 bits (134), Expect = 1e-09
Identities = 25/64 (39%), Positives = 41/64 (64%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ + D+ G + +I E V+ L++P ++ +G K PRG ++ GPPGTGKTL+A+A A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAG 351
Query: 247 ETGL 258
E +
Sbjct: 352 EANV 355
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 500 GHERPNSIDPALRRFGRFDREIDIGIPE 583
G RP+ +DPAL R GRFDR+I I P+
Sbjct: 441 GTNRPDVLDPALLRPGRFDRQITIDRPD 468
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIAARVS 675
P GR +I ++H +++K D++DL IA R++
Sbjct: 467 PDIGGREQIFKVHLKHIKAADNIDL--IAKRLA 497
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DDI G +KE V P P LF+ + +P RG+L++GPPGTGKT++ARAVA
Sbjct: 456 VHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVAT 514
Query: 247 ET 252
E+
Sbjct: 515 ES 516
Score = 54.4 bits (125), Expect = 1e-08
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Frame = +3
Query: 249 NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVE 428
+R+ FF I+ + SK GESE +R F A K SP+IIF+DE+D++ R E E
Sbjct: 516 SRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHE 575
Query: 429 --RRIVSQLLTLMDGMKKSS---------HVIVMAATN 509
RRI ++ L + +++ V+V+AATN
Sbjct: 576 TSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATN 613
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 62.9 bits (146), Expect = 4e-11
Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPPRGILMYGPPGTGKTLIARAV 240
V +DDIGG + + Q+ + V PL++P +F G + P+G+L+YGPPG GKT++A+A+
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKAL 145
Query: 241 ANET 252
A ++
Sbjct: 146 AKQS 149
Score = 51.2 bits (117), Expect = 1e-07
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 249 NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVE 428
++A F ++ + K GES + F A K P IIFIDE+D +R++T E
Sbjct: 149 SQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAM 208
Query: 429 RRIVSQLLTLMDG-MKKSSHVIVMAATN 509
+I ++ +++ DG + S V+V+ ATN
Sbjct: 209 AQIKAEFMSMWDGLLSGQSRVLVLGATN 236
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 58.4 bits (135), Expect = 9e-10
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V + DI G +KE V P P LF+ + +P +G+L++GPPGTGKT++ARAVA
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVAT 434
Query: 247 ETGLSSF 267
E + F
Sbjct: 435 EAKATFF 441
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Frame = +3
Query: 252 RAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVE- 428
+A FF I+ + SK G+SE +R FE A + + ++IF+DE+D+I R + E E
Sbjct: 437 KATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHES 496
Query: 429 -RRIVSQLLTLMDGM------KKSSH---VIVMAATN 509
RR+ ++ L + K++ H V+V+AATN
Sbjct: 497 SRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATN 533
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 136 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANE 249
LR+ + G+ RG L+YGPPG+GKT A+A E
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETG 255
R ILM GPP TGKT IA +A G
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLG 90
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 151 LFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 255
+ +A+ V P IL+ G PG GKT + A+A ETG
Sbjct: 1552 VLRALQVLKP--ILLEGSPGVGKTSLITALARETG 1584
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANETG 255
IL+ GP +GKT + VA +TG
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTG 919
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETG 255
+G+L G GTGKT +A A+A E G
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELG 89
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANETGLSSF*LMD 279
I++ G PGTGKT +A VA T L + + D
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELENICIGD 41
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVAN 246
+P L GP GTGKTL+ +A+A+
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALAS 636
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETG 255
+ +L+ GPPG GKT A VA G
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEG 434
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANE 249
+L YGPPGTGKT A A +
Sbjct: 59 MLFYGPPGTGKTSTILACARK 79
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 112 IKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+K++ + L ++ K G + + + GPPG GKT + +++A+
Sbjct: 549 LKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIAS 593
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 190 LMYGPPGTGKTLIARAVANETG 255
++ GP G+GKT +A+AV+ + G
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG 39
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 175 PPRGILMYGPPGTGKTLIARAV 240
PP + + GPPGTGK+ + +++
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSL 94
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 190 LMYGPPGTGKTLIARAV 240
L+ GPPGTGKT+ + +V
Sbjct: 411 LIQGPPGTGKTVTSASV 427
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANE 249
+L YG PGTGKT A++ E
Sbjct: 55 MLFYGSPGTGKTSTILALSRE 75
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 85 GGCRKQLAQIKEMVELPLRHPSLFKAIGVKP-PRGILMYGPPGTGKTLI 228
G ++ +K+M + P+L ++ V P+GI +YG G GKT +
Sbjct: 87 GSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTAL 134
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 396 PK-REKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNGRTPSTRR 533
PK R +T EVERRIV T K H ++ N + PS RR
Sbjct: 412 PKSRVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEYN-QAPSLRR 457
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1
Query: 190 LMYGPPGTGKT 222
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTG-KTLIAR 234
VKP +L+ GPP +G KTL++R
Sbjct: 277 VKPRTKLLLLGPPKSGKKTLLSR 299
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVA 243
+P L GP G GKT + +A+A
Sbjct: 530 RPLASFLFLGPTGVGKTALTKALA 553
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 7.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -3
Query: 422 FTVGFLSLWCNSIEFINEDNSRR 354
+TV ++LW +++++ +D RR
Sbjct: 633 YTVKIIALWGRAVKYLKQDGKRR 655
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANETGL 258
+ YG GTGKT + NE G+
Sbjct: 214 VFAYGMTGTGKTYSMQGTENEPGI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,000
Number of Sequences: 5004
Number of extensions: 52480
Number of successful extensions: 325
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -