Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021363
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 156 1e-38
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 153 8e-38
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 153 8e-38
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 96 2e-20
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 95 5e-20
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 95 5e-20
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 92 4e-19
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 92 4e-19
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 92 4e-19
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 91 5e-19
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 91 5e-19
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 85 3e-17
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 85 3e-17
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 83 2e-16
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 83 2e-16
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 82 3e-16
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 79 3e-15
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 78 5e-15
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 77 1e-14
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 75 3e-14
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 73 2e-13
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 72 3e-13
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 72 3e-13
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 72 3e-13
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 71 7e-13
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 71 9e-13
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 70 1e-12
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 70 2e-12
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 69 2e-12
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 69 3e-12
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 69 4e-12
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 69 4e-12
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 69 4e-12
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 68 5e-12
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 68 5e-12
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 66 2e-11
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 66 2e-11
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 66 2e-11
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 65 4e-11
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 65 5e-11
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 65 5e-11
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 65 5e-11
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 65 5e-11
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 64 8e-11
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 64 8e-11
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 63 1e-10
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 63 2e-10
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 62 3e-10
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 62 4e-10
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 61 6e-10
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 61 6e-10
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 61 6e-10
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 61 8e-10
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 61 8e-10
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 60 1e-09
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 48 4e-06
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 44 7e-05
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 44 9e-05
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 43 2e-04
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 43 2e-04
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 42 3e-04
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 42 4e-04
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 42 4e-04
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 42 5e-04
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 42 5e-04
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 42 5e-04
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 42 5e-04
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 41 7e-04
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 40 0.002
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 40 0.002
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 40 0.002
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 40 0.002
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 39 0.003
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 39 0.004
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 38 0.005
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 38 0.006
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 38 0.006
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 38 0.008
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 38 0.008
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 37 0.011
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 37 0.011
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 37 0.014
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 37 0.014
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 36 0.019
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 36 0.019
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 36 0.019
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 35 0.044
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 35 0.044
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 34 0.076
At2g41860.2 68415.m05174 calcium-dependent protein kinase, putat... 34 0.10
At2g41860.1 68415.m05173 calcium-dependent protein kinase, putat... 34 0.10
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 33 0.13
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 33 0.13
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 33 0.18
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 33 0.18
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 33 0.18
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor... 32 0.31
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 32 0.31
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 32 0.41
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 32 0.41
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 31 0.54
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 31 0.54
At2g36380.1 68415.m04464 ABC transporter family protein related ... 31 0.54
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 31 0.71
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 31 0.94
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 31 0.94
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 31 0.94
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 31 0.94
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 31 0.94
At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR... 30 1.2
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 30 1.2
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.2
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 30 1.2
At1g73170.1 68414.m08466 expressed protein 30 1.2
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 30 1.2
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 30 1.6
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 30 1.6
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 30 1.6
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 30 1.6
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 29 2.2
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 2.2
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 29 2.2
At3g53590.1 68416.m05919 leucine-rich repeat transmembrane prote... 29 2.2
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 29 2.2
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 29 2.2
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 29 2.2
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 29 2.2
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 29 2.2
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 29 2.2
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 29 2.2
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 29 2.9
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 29 2.9
At1g50700.1 68414.m05701 calcium-dependent protein kinase, putat... 29 2.9
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 29 3.8
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 3.8
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 3.8
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR... 29 3.8
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 3.8
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 29 3.8
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 29 3.8
At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q... 29 3.8
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 29 3.8
At2g01320.4 68415.m00049 ABC transporter family protein 29 3.8
At2g01320.3 68415.m00047 ABC transporter family protein 29 3.8
At2g01320.2 68415.m00046 ABC transporter family protein 29 3.8
At2g01320.1 68415.m00048 ABC transporter family protein 29 3.8
At1g61950.1 68414.m06988 calcium-dependent protein kinase, putat... 29 3.8
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR... 29 3.8
At5g61560.1 68418.m07725 protein kinase family protein contains ... 28 5.0
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 28 5.0
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 5.0
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 28 5.0
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 28 5.0
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 28 5.0
At1g05990.1 68414.m00627 calcium-binding protein, putative stron... 28 5.0
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 6.6
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 28 6.6
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR... 28 6.6
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 6.6
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR... 28 6.6
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 28 6.6
At4g27420.1 68417.m03941 ABC transporter family protein D.melano... 28 6.6
At3g57530.1 68416.m06406 calcium-dependent protein kinase, putat... 28 6.6
At3g25620.1 68416.m03189 ABC transporter family protein similar ... 28 6.6
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 28 6.6
At1g21550.1 68414.m02695 calcium-binding protein, putative conta... 28 6.6
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 28 6.6
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 8.8
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 27 8.8
At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR... 27 8.8
At5g12480.1 68418.m01466 calmodulin-domain protein kinase isofor... 27 8.8
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 27 8.8
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 27 8.8
At3g20200.1 68416.m02560 protein kinase family protein contains ... 27 8.8
At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS cla... 27 8.8
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 27 8.8
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR... 27 8.8
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 156 bits (379), Expect = 1e-38
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 434
AFFF INGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDE+D+IAPKREKTHGEVERR
Sbjct: 268 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327
Query: 435 IVSQLLTLMDGMKKSSHVIVMAATN 509
IVSQLLTLMDG+K +HVIVM ATN
Sbjct: 328 IVSQLLTLMDGLKSRAHVIVMGATN 352
Score = 147 bits (356), Expect = 7e-36
Identities = 67/88 (76%), Positives = 78/88 (88%)
Frame = +1
Query: 4 TRIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR 183
T I C+GEPIKRE+EE L+ VGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 185 TEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
Query: 184 GILMYGPPGTGKTLIARAVANETGLSSF 267
GIL+YGPPG+GKTLIARAVANETG F
Sbjct: 244 GILLYGPPGSGKTLIARAVANETGAFFF 271
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/89 (41%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Frame = +3
Query: 252 RAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGE--- 422
+A F I GPE+++ GESE+N+R+ F++A +++P ++F DELD+IA +R + G+
Sbjct: 540 QANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGG 599
Query: 423 VERRIVSQLLTLMDGMKKSSHVIVMAATN 509
R+++QLLT MDGM V ++ ATN
Sbjct: 600 AADRVLNQLLTEMDGMNAKKTVFIIGATN 628
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/71 (46%), Positives = 47/71 (66%)
Frame = +1
Query: 37 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 216
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG G
Sbjct: 469 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 527
Query: 217 KTLIARAVANE 249
KTL+A+A+ANE
Sbjct: 528 KTLLAKAIANE 538
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTAASRFCAYTPRT*S*ETTSILNRSQQESH 676
G RPNSIDPALRRFGRFDREIDIG+P+ + L R +++H
Sbjct: 349 GATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTH 408
Query: 677 GHL 685
G++
Sbjct: 409 GYV 411
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPE 583
G RP+ IDPAL R GR D+ I I +P+
Sbjct: 625 GATNRPDIIDPALLRPGRLDQLIYIPLPD 653
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 153 bits (372), Expect = 8e-38
Identities = 73/85 (85%), Positives = 81/85 (95%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 434
AFFF INGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDE+D+IAPKREKT+GEVERR
Sbjct: 267 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERR 326
Query: 435 IVSQLLTLMDGMKKSSHVIVMAATN 509
IVSQLLTLMDG+K +HVIVM ATN
Sbjct: 327 IVSQLLTLMDGLKSRAHVIVMGATN 351
Score = 146 bits (355), Expect = 9e-36
Identities = 66/88 (75%), Positives = 78/88 (88%)
Frame = +1
Query: 4 TRIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR 183
T I C+GEP+KRE+EE L+ VGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 184 TEIFCEGEPVKREDEER-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Query: 184 GILMYGPPGTGKTLIARAVANETGLSSF 267
GIL+YGPPG+GKTLIARAVANETG F
Sbjct: 243 GILLYGPPGSGKTLIARAVANETGAFFF 270
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Frame = +3
Query: 252 RAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGE--- 422
+A F + GPE+++ GESE+N+R+ F++A +++P ++F DELD+IA +R + G+
Sbjct: 539 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGG 598
Query: 423 VERRIVSQLLTLMDGMKKSSHVIVMAATN 509
R+++QLLT MDGM V ++ ATN
Sbjct: 599 AADRVLNQLLTEMDGMNAKKTVFIIGATN 627
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/71 (46%), Positives = 47/71 (66%)
Frame = +1
Query: 37 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 216
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG G
Sbjct: 468 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 526
Query: 217 KTLIARAVANE 249
KTL+A+A+ANE
Sbjct: 527 KTLLAKAIANE 537
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTAASRFCAYTPRT*S*ETTSILNRSQQESH 676
G RPNSIDPALRRFGRFDREIDIG+P+ + L R +++H
Sbjct: 348 GATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTH 407
Query: 677 GHL 685
G++
Sbjct: 408 GYV 410
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 153 bits (372), Expect = 8e-38
Identities = 73/85 (85%), Positives = 81/85 (95%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 434
AFFF INGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDE+D+IAPKREKT+GEVERR
Sbjct: 267 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERR 326
Query: 435 IVSQLLTLMDGMKKSSHVIVMAATN 509
IVSQLLTLMDG+K +HVIVM ATN
Sbjct: 327 IVSQLLTLMDGLKSRAHVIVMGATN 351
Score = 146 bits (354), Expect = 1e-35
Identities = 66/88 (75%), Positives = 78/88 (88%)
Frame = +1
Query: 4 TRIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR 183
T I C+GEP+KRE+EE L+ VGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 184 TEIFCEGEPVKREDEER-LDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Query: 184 GILMYGPPGTGKTLIARAVANETGLSSF 267
GIL+YGPPG+GKTLIARAVANETG F
Sbjct: 243 GILLYGPPGSGKTLIARAVANETGAFFF 270
Score = 74.9 bits (176), Expect = 4e-14
Identities = 33/71 (46%), Positives = 47/71 (66%)
Frame = +1
Query: 37 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 216
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG G
Sbjct: 468 RETVVEVPN-VSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 526
Query: 217 KTLIARAVANE 249
KTL+A+A+ANE
Sbjct: 527 KTLLAKAIANE 537
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Frame = +3
Query: 252 RAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR----EKTHG 419
+A F + GPE+++ GESE+N+R+ F++A +++P ++F DELD+IA +R G
Sbjct: 539 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGG 598
Query: 420 EVERRIVSQLLTLMDGMKKSSHVIVMAATN 509
R+++QLLT MDGM V ++ ATN
Sbjct: 599 GAADRVLNQLLTEMDGMNAKKTVFIIGATN 628
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTAASRFCAYTPRT*S*ETTSILNRSQQESH 676
G RPNSIDPALRRFGRFDREIDIG+P+ + L R +++H
Sbjct: 348 GATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTH 407
Query: 677 GHL 685
G++
Sbjct: 408 GYV 410
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 96.3 bits (229), Expect = 2e-20
Identities = 38/61 (62%), Positives = 51/61 (83%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
Y DIGGC++Q+ +I+E+VELP+ HP F +G+ PP+G+L YGPPG+GKTL+ARAVAN T
Sbjct: 204 YSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRT 263
Query: 253 G 255
G
Sbjct: 264 G 264
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR----EKTHGE 422
A F + G E++ K GE +R+ F+ A I+F DE+DAI R + E
Sbjct: 265 ACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNE 324
Query: 423 VERRIVSQLLTLMDGMKKSSHVIVMAATN 509
V+R ++ ++L +DG ++ V+ ATN
Sbjct: 325 VQRTML-EILYQLDGFDARGNIKVLMATN 352
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTAASRFCAYTPRT*S*E 637
RP+ +DPAL R GR DR+++ +P+ ++ RT S E
Sbjct: 353 RPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCE 395
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 94.7 bits (225), Expect = 5e-20
Identities = 40/62 (64%), Positives = 50/62 (80%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V Y+DIGGC Q +I+E VELPL H L+K IG+ PPRG+L+YGPPGTGKT++A+AVAN
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 211
Query: 247 ET 252
T
Sbjct: 212 HT 213
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE 428
A F + G E + K GE +R F A +N+PAIIFIDE+DAIA R +T + E
Sbjct: 215 AAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADRE 274
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+RI+ +LL MDG ++ +V V+ ATN
Sbjct: 275 VQRILMELLNQMDGFDQTVNVKVIMATN 302
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPER 586
R +++DPAL R GR DR+I+ +P+R
Sbjct: 303 RADTLDPALLRPGRLDRKIEFPLPDR 328
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 94.7 bits (225), Expect = 5e-20
Identities = 37/62 (59%), Positives = 52/62 (83%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V Y+D+GGC++Q+ +++E+VELP+ HP F +G+ PP+G+L YGPPGTGKTL+ARAVAN
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
Query: 247 ET 252
T
Sbjct: 225 RT 226
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE 428
A F + G E++ K GE +R+ F+ A I+F DE+DAI R + G+ E
Sbjct: 228 ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNE 287
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +++ +DG ++ V+ ATN
Sbjct: 288 VQRTMLEIVNQLDGFDARGNIKVLMATN 315
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTAASRFCAYTPRT 625
RP+++DPAL R GR DR+++ G+P+ + ++ RT
Sbjct: 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 91.9 bits (218), Expect = 4e-19
Identities = 38/60 (63%), Positives = 49/60 (81%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
Y DIGG Q+ +IKE VELPL HP L++ IG+KPP+G+++YG PGTGKTL+A+AVAN T
Sbjct: 187 YADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 246
Score = 61.7 bits (143), Expect = 4e-10
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTH--GEVE 428
A F + G E++ K G+ +R+ F AD SP+I+FIDE+DA+ KR H GE E
Sbjct: 248 ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE 307
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +LL +DG V V+ ATN
Sbjct: 308 IQRTMLELLNQLDGFDSRGDVKVILATN 335
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
R S+DPAL R GR DR+I+ +P+
Sbjct: 336 RIESLDPALLRPGRIDRKIEFPLPD 360
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQ 657
P R I +IHT M L +DV+LE+
Sbjct: 359 PDIKTRRRIFQIHTSKMTLSEDVNLEE 385
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 91.9 bits (218), Expect = 4e-19
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
FF +NGPEI+S+ GESE L + F A +PA++FID+LDAIAP R++ E+ +R+V
Sbjct: 446 FFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPARKEGGEELSQRMV 505
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
+ LL LMDG+ ++ V+V+AATN
Sbjct: 506 ATLLNLMDGISRTDGVVVIAATN 528
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/65 (52%), Positives = 45/65 (69%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V ++D+GG + Q+ E VE P +H FK IG +PP GILM+GPPG KTL+ARAVA+
Sbjct: 721 VNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVAS 780
Query: 247 ETGLS 261
E L+
Sbjct: 781 EAKLN 785
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG--EVERR 434
F + GPE+ SK GESE +R F +A N+P+IIF DE+D++A R K + V R
Sbjct: 786 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASIRGKENDGVSVSDR 845
Query: 435 IVSQLLTLMDGMKKSSHVIVMAATN 509
++SQLL +DG+ + V V+AATN
Sbjct: 846 VMSQLLVELDGLHQRVGVTVIAATN 870
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/62 (37%), Positives = 43/62 (69%)
Frame = +1
Query: 82 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGLS 261
+GG K+ A ++++++ SL ++G++P +G+L++GPPGTGKT +AR A +G++
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVN 445
Query: 262 SF 267
F
Sbjct: 446 FF 447
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTAAS 598
RP+SI+PALRR GR DREI+IG+P T S
Sbjct: 529 RPDSIEPALRRPGRLDREIEIGVPSSTQRS 558
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERT 589
RP+ ID AL R GRFDR + +G P T
Sbjct: 871 RPDKIDSALLRPGRFDRLLYVGPPNET 897
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 91.9 bits (218), Expect = 4e-19
Identities = 38/60 (63%), Positives = 49/60 (81%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
Y DIGG Q+ +IKE VELPL HP L++ IG+KPP+G+++YG PGTGKTL+A+AVAN T
Sbjct: 187 YADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 246
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE 428
A F + G E++ K G+ +R+ F AD SP+I+FIDE+DA+ KR + GE E
Sbjct: 248 ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGERE 307
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +LL +DG V V+ ATN
Sbjct: 308 IQRTMLELLNQLDGFDSRGDVKVILATN 335
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
R S+DPAL R GR DR+I+ +P+
Sbjct: 336 RIESLDPALLRPGRIDRKIEFPLPD 360
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQ 657
P R I +IHT M L +DV+LE+
Sbjct: 359 PDIKTRRRIFQIHTSKMTLAEDVNLEE 385
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 91.5 bits (217), Expect = 5e-19
Identities = 36/60 (60%), Positives = 52/60 (86%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT---HGEVE- 428
F ++G E++ K GE +R+ F A +++P+IIF+DE+D+I R ++ +G+ E
Sbjct: 223 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282
Query: 429 RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +LL +DG + S+ + V+ ATN
Sbjct: 283 QRTMLELLNQLDGFEASNKIKVLMATN 309
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 574 HPRANGRLEILRIHTQNMKLGDDVDLEQIAARVS 675
+P R +IL+IH++ M L +DL++IA +++
Sbjct: 332 NPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMN 365
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 91.5 bits (217), Expect = 5e-19
Identities = 36/60 (60%), Positives = 52/60 (86%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT---HGEVE- 428
F ++G E++ K GE +R+ F A +++P+IIF+DE+D+I R ++ +G+ E
Sbjct: 223 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282
Query: 429 RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +LL +DG + S+ + V+ ATN
Sbjct: 283 QRTMLELLNQLDGFEASNKIKVLMATN 309
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 574 HPRANGRLEILRIHTQNMKLGDDVDLEQIAARVS 675
+P R +IL+IH++ M L +DL++IA +++
Sbjct: 332 NPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMN 365
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 85.4 bits (202), Expect = 3e-17
Identities = 34/74 (45%), Positives = 52/74 (70%)
Frame = +1
Query: 25 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 204
+P+ E + Y +GG Q+ +++E +ELPL +P LF +G+KPP+G+L+YGP
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 205 PGTGKTLIARAVAN 246
PGTGKTL+ARA+A+
Sbjct: 182 PGTGKTLLARAIAS 195
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE 428
A F + I+ K GES +R+ F A ++ P IIF+DE+DAI +R E T + E
Sbjct: 199 ANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADRE 258
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +LL +DG V ++ ATN
Sbjct: 259 IQRTLMELLNQLDGFDNLGKVKMIMATN 286
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP 580
RP+ +DPAL R GR DR+I+I +P
Sbjct: 287 RPDVLDPALLRPGRLDRKIEIPLP 310
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 85.4 bits (202), Expect = 3e-17
Identities = 34/74 (45%), Positives = 52/74 (70%)
Frame = +1
Query: 25 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 204
+P+ E + Y +GG Q+ +++E +ELPL +P LF +G+KPP+G+L+YGP
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 205 PGTGKTLIARAVAN 246
PGTGKTL+ARA+A+
Sbjct: 182 PGTGKTLLARAIAS 195
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR--EKTHGEVE 428
A F + I+ K GES +R+ F A ++ P IIF+DE+DAI +R E T + E
Sbjct: 199 ANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADRE 258
Query: 429 -RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+R + +LL +DG + V ++ ATN
Sbjct: 259 IQRTLMELLNQLDGFDQLGKVKMIMATN 286
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP 580
RP+ +DPAL R GR DR+I+I +P
Sbjct: 287 RPDVLDPALLRPGRLDRKIEIPLP 310
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
F++ G +++SK GE+E L+ FEEA +N P+IIF DE+D +AP R ++ IV
Sbjct: 448 FYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 507
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
S LL LMDG+ V+++ ATN
Sbjct: 508 STLLALMDGLDSRGQVVLIGATN 530
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVA 243
+ +DDIGG + + +KEMV PL +P F + + PPRG+L+ GPPGTGKTLIARA+A
Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALA 436
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIP 580
G R ++ID ALRR GRFDRE + +P
Sbjct: 527 GATNRVDAIDGALRRPGRFDREFNFSLP 554
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 82.6 bits (195), Expect = 2e-16
Identities = 33/60 (55%), Positives = 47/60 (78%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+L+YGPPGTGKTL+ARA A +T
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 229
Score = 62.1 bits (144), Expect = 3e-10
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +3
Query: 216 KNTHCSCCC**NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 395
K C A F + GP+++ G+ +R AF+ A + +P IIFIDE+DAI
Sbjct: 218 KTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIG 277
Query: 396 PKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 509
KR + G+ E +R + +LL +DG + V+AATN
Sbjct: 278 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATN 318
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 574 HPRANGRLEILRIHTQNMKLGDDVDLEQIA 663
HP R IL+IH++ M + DV+ E++A
Sbjct: 341 HPTEEARARILQIHSRKMNVHPDVNFEELA 370
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTAASR 601
R + +DPAL R GR DR+I+ P A +R
Sbjct: 319 RADILDPALMRSGRLDRKIEFPHPTEEARAR 349
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 82.2 bits (194), Expect = 3e-16
Identities = 32/60 (53%), Positives = 47/60 (78%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
Y+DIGG KQ+ ++ E + LP+ H F+ +G++PP+G+L+YGPPGTGKTL+ARA A +T
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQT 228
Score = 61.3 bits (142), Expect = 6e-10
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 216 KNTHCSCCC**NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 395
K C A F + GP+++ G+ +R AF A + SP IIFIDE+DAI
Sbjct: 217 KTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIG 276
Query: 396 PKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 509
KR + G+ E +R + +LL +DG + V+AATN
Sbjct: 277 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 317
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTAASR 601
R + +DPAL R GR DR+I+ P A R
Sbjct: 318 RADILDPALMRSGRLDRKIEFPHPTEEARGR 348
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 574 HPRANGRLEILRIHTQNMKLGDDVDLEQIA 663
HP R IL+IH++ M + DV+ E++A
Sbjct: 340 HPTEEARGRILQIHSRKMNVNADVNFEELA 369
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/69 (50%), Positives = 52/69 (75%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
F+ I+ E++S ++G SE N+R+ F +A + +P+I+FIDE+DAI KRE E+E+RIV
Sbjct: 295 FYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIV 354
Query: 441 SQLLTLMDG 467
+QLLT MDG
Sbjct: 355 TQLLTCMDG 363
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/71 (47%), Positives = 45/71 (63%)
Frame = +1
Query: 46 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL 225
E E + D GG +K L +++ V P+ +P FK IGVKPP GIL +GPPG GKT
Sbjct: 223 EVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTK 282
Query: 226 IARAVANETGL 258
+A A+ANE G+
Sbjct: 283 LANAIANEAGV 293
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/63 (47%), Positives = 39/63 (61%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DD+GG Q + P++ P ++KA GV G L+YGPPG GKTLIA+A AN
Sbjct: 525 VKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAAN 584
Query: 247 ETG 255
E G
Sbjct: 585 EAG 587
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 434
A F I G E+++K GESE +R F+ A +P +IF DE+DA+ R K V R
Sbjct: 588 ANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVER 647
Query: 435 IVSQLLTLMDGMKKSSHVIVMAATN 509
+++Q L +DG ++ +V V+ ATN
Sbjct: 648 LLNQFLVELDGGER-RNVYVIGATN 671
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPERTA 592
G RP+++DPALRR GRF+ EI + P+ A
Sbjct: 384 GATNRPDALDPALRRSGRFETEIALTAPDEDA 415
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/86 (40%), Positives = 52/86 (60%)
Frame = +3
Query: 252 RAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVER 431
R +F G + + K G++E LR F+ A+K P+IIF DE+D +APKR + +
Sbjct: 783 RIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPKRSRQQDQTHS 842
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
+VS LL L+DG+K V+V+ ATN
Sbjct: 843 SVVSTLLALLDGLKSRGSVVVIGATN 868
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +1
Query: 25 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 204
E I + E G+D + G +KE+V +PL +P F +G+ PPRGIL++G
Sbjct: 702 EYIGGSDSESGKAFEGWDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGH 761
Query: 205 PGTGKTLIARAV 240
PGTGKTL+ RA+
Sbjct: 762 PGTGKTLVVRAL 773
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIP 580
G P++IDPALRR GRFDREI +P
Sbjct: 865 GATNYPDAIDPALRRPGRFDREIYFPLP 892
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V + DIG + ++E+V LPLR P LFK +KP RGIL++GPPGTGKT++A+A+AN
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 247 ETGLS 261
E G S
Sbjct: 471 EAGAS 475
Score = 57.6 bits (133), Expect = 7e-09
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT-HGEVER 431
A F ++ I SK GE E N+R F A K SP IIF+DE+D++ +R + E R
Sbjct: 474 ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMR 533
Query: 432 RIVSQLLTLMDGMKKSS--HVIVMAATN 509
+I ++ +T DG+ ++ ++V+AATN
Sbjct: 534 KIKNEFMTHWDGLMSNAGDRILVLAATN 561
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 75.4 bits (177), Expect = 3e-14
Identities = 36/83 (43%), Positives = 52/83 (62%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
FF ++ E + G + +R F A KNSP+IIFIDELDA+ KR ++ + + +
Sbjct: 395 FFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKRGRSFNDERDQTL 454
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
+QLLT MDG + + VIV+AATN
Sbjct: 455 NQLLTEMDGFESDTKVIVIAATN 477
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/87 (37%), Positives = 50/87 (57%)
Frame = +1
Query: 7 RIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRG 186
++ P K+ + VG+DD+ G ++ E+V L+ +K +G + PRG
Sbjct: 313 QLSASNSPAKKRRSKNP--TVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRG 369
Query: 187 ILMYGPPGTGKTLIARAVANETGLSSF 267
+L+ GPPGTGKTL+ARAVA E G+ F
Sbjct: 370 VLLVGPPGTGKTLLARAVAGEAGVPFF 396
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPERTAASRFCA 610
RP ++D AL R GRF R++ + P++ + A
Sbjct: 478 RPEALDSALCRPGRFSRKVLVAEPDQEGRRKILA 511
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPPRGILMYGPPGTGKTLIARAVA 243
V +DDIG +KE+V LPL+ P LF K KP +GIL++GPPGTGKT++A+AVA
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1019
Query: 244 NETG 255
E G
Sbjct: 1020 TEAG 1023
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT-HGEVER 431
A F I+ I SK GE E ++ F A K +P++IF+DE+D++ +RE E R
Sbjct: 1024 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMR 1083
Query: 432 RIVSQLLTLMDGM--KKSSHVIVMAATN 509
++ ++ + DG+ K V+V+AATN
Sbjct: 1084 KMKNEFMVNWDGLRTKDRERVLVLAATN 1111
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/83 (42%), Positives = 52/83 (62%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
F + GPE+++K G SE +R F +A +P I+F DE D+IAPKR + V R+V
Sbjct: 906 FISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGHDNTGVTDRVV 965
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
+Q LT +DG++ + V V AAT+
Sbjct: 966 NQFLTELDGVEVLTGVFVFAATS 988
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVA 243
+G++D+GG IKEM+ELP + P +F ++ +L+YGPPG GKT I A A
Sbjct: 841 LGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAA 899
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVA 243
F + P IL+YGPPG+GKT++ARA A
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAA 614
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIA 663
P RLEIL + ++ + + DD+DLE IA
Sbjct: 1012 PSPPERLEILTVLSRKLLMADDIDLEPIA 1040
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = +1
Query: 52 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIA 231
E +N V + DIG + ++E+V LPLR P LF +KP RGIL++GPPGTGKT++A
Sbjct: 514 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLA 572
Query: 232 RAVANETGLS 261
+A+A E G S
Sbjct: 573 KAIAKEAGAS 582
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT-HGEVER 431
A F ++ I SK GE E N+R F A K SP IIF+DE+D++ +R + E R
Sbjct: 581 ASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMR 640
Query: 432 RIVSQLLTLMDGM--KKSSHVIVMAATN 509
+I ++ ++ DG+ K ++V+AATN
Sbjct: 641 KIKNEFMSHWDGLMTKPGERILVLAATN 668
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = +1
Query: 52 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIA 231
E +N V + DIG + ++E+V LPLR P LF +KP RGIL++GPPGTGKT++A
Sbjct: 509 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLA 567
Query: 232 RAVANETGLS 261
+A+A E G S
Sbjct: 568 KAIAKEAGAS 577
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT-HGEVER 431
A F ++ I SK GE E N+R F A K SP IIF+DE+D++ +R + E R
Sbjct: 576 ASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMR 635
Query: 432 RIVSQLLTLMDGM--KKSSHVIVMAATN 509
+I ++ ++ DG+ K ++V+AATN
Sbjct: 636 KIKNEFMSHWDGLMTKPGERILVLAATN 663
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 70.9 bits (166), Expect = 7e-13
Identities = 30/75 (40%), Positives = 50/75 (66%)
Frame = +1
Query: 34 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 213
K E + V + D+ G + + +++E+V+ L++P LF +G+KPP G+L+ GPPG
Sbjct: 416 KAEARVDGSTGVKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGC 474
Query: 214 GKTLIARAVANETGL 258
GKTL+A+A+A E G+
Sbjct: 475 GKTLVAKAIAGEAGV 489
Score = 52.0 bits (119), Expect = 4e-07
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGE------ 422
F+ + G E + L G + +R F+ A N P++IFIDE+DA+A +R+ E
Sbjct: 491 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKENSDQLY 550
Query: 423 ----VERR-IVSQLLTLMDGMKKSSHVIVMAATNGR 515
ER ++QLL +DG VI + ATN R
Sbjct: 551 NAATQERETTLNQLLIELDGFDTGKGVIFLGATNRR 586
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 565 RHRHPRANGRLEILRIHTQNMKLGDDVDLEQIAARV 672
R R P A GRL+IL+IH +K+ D VDL A+ +
Sbjct: 604 RVRPPNAKGRLDILKIHASKVKMSDSVDLSSYASNL 639
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIP 580
G R + +DPAL R GRFDR+I + P
Sbjct: 581 GATNRRDLLDPALLRPGRFDRKIRVRPP 608
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 70.5 bits (165), Expect = 9e-13
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT--HGEVERR 434
F + GPE+++ GESE N+R FE+A P +IF DELD++AP R + G V R
Sbjct: 719 FLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASGDSGGVMDR 778
Query: 435 IVSQLLTLMDGMKKSSH-VIVMAATN 509
+VSQ+L +DG+ SS + ++ A+N
Sbjct: 779 VVSQMLAEIDGLSDSSQDLFIIGASN 804
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DD+GG I + V+LPL H LF + G++ G+L+YGPPGTGKTL+A+AVA
Sbjct: 655 VKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 713
Query: 247 ETGLS 261
E L+
Sbjct: 714 ECSLN 718
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGI 577
G RP+ IDPAL R GRFD+ + +G+
Sbjct: 801 GASNRPDLIDPALLRPGRFDKLLYVGV 827
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1
Query: 34 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 213
K + + E V +DD+ G + E+VE L+ P F A+G K P+G+L+ GPPGT
Sbjct: 213 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGT 271
Query: 214 GKTLIARAVANETGLSSF 267
GKTL+A+A+A E G+ F
Sbjct: 272 GKTLLAKAIAGEAGVPFF 289
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG---EVER 431
FF I+G E + G S +R F++A +N+P I+F+DE+DA+ +R G +
Sbjct: 288 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 347
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
+ ++QLLT MDG + ++ VIV+AATN
Sbjct: 348 QTLNQLLTEMDGFEGNTGVIVVAATN 373
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
R + +D AL R GRFDR++ + +P+
Sbjct: 374 RADILDSALLRPGRFDRQVSVDVPD 398
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPPRGILMYGPPGTGKTLIARAVA 243
V + DIG +KE+V LPL+ P LF K KP +GIL++GPPGTGKT++A+AVA
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1006
Query: 244 NETG 255
E G
Sbjct: 1007 TEAG 1010
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT-HGEVER 431
A F I+ I SK GE E ++ F A K +P++IF+DE+D++ +RE E R
Sbjct: 1011 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMR 1070
Query: 432 RIVSQLLTLMDGM--KKSSHVIVMAATN 509
++ ++ + DG+ K V+V+AATN
Sbjct: 1071 KMKNEFMINWDGLRTKDKERVLVLAATN 1098
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPPRGILMYGPPGTGKTLIARAVA 243
V +DDIG K +KE+V LPL+ P LF K KP +GIL++GPPGTGKT++A+AVA
Sbjct: 817 VTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAVA 876
Query: 244 NE 249
E
Sbjct: 877 KE 878
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKRE-KTHGEVER 431
A F I+ I SK GE E ++ F A K SP++IF+DE+D++ +RE E R
Sbjct: 881 ANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGRREHPREHEASR 940
Query: 432 RIVSQLLTLMDGM--KKSSHVIVMAATN 509
+I ++ + DG+ ++ V+V+AATN
Sbjct: 941 KIKNEFMMHWDGLTTQERERVLVLAATN 968
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +1
Query: 34 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 213
K + + E V +DD+ G + E+VE L+ P F A+G + P+G+L+ GPPGT
Sbjct: 206 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGT 264
Query: 214 GKTLIARAVANETGLSSF 267
GKTL+A+A+A E G+ F
Sbjct: 265 GKTLLAKAIAGEAGVPFF 282
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG---EVER 431
FF I+G E + G S +R F++A +N+P I+F+DE+DA+ +R G +
Sbjct: 281 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 340
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
+ ++QLLT MDG + ++ VIV+AATN
Sbjct: 341 QTLNQLLTEMDGFEGNTGVIVVAATN 366
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
R + +D AL R GRFDR++ + +P+
Sbjct: 367 RADILDSALLRPGRFDRQVSVDVPD 391
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Frame = +3
Query: 252 RAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR----EKTHG 419
+A FF ++ E+ S GE E+ LR F+ A SP+IIF DE D +A KR
Sbjct: 345 QASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSS 404
Query: 420 EVERRIVSQLLTLMDGMKKSSHVIVMAATN 509
V R++S LLT MDG++++ ++V+AATN
Sbjct: 405 TVGERLLSTLLTEMDGLEEAKGILVLAATN 434
Score = 67.3 bits (157), Expect = 9e-12
Identities = 28/67 (41%), Positives = 44/67 (65%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DD+GG + ++++ VE P++H + F +G+ P RGIL++GPPG KT +A+A AN
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAAN 342
Query: 247 ETGLSSF 267
S F
Sbjct: 343 AAQASFF 349
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +1
Query: 79 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANE 249
+IGG + L ++E++ P R+P + +G+K PRG+L+YGPPGTGKT + RAV E
Sbjct: 23 EIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQE 79
Score = 64.5 bits (150), Expect = 6e-11
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 7/77 (9%)
Frame = +3
Query: 300 AGESESNLRKAFEEADKNS----PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 467
AGESE LR+AF EA ++ P++IFIDE+D + P+R+ E + RI SQL TLMD
Sbjct: 97 AGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRD-ARREQDVRIASQLFTLMDS 155
Query: 468 MKKSS---HVIVMAATN 509
K SS V+V+A+TN
Sbjct: 156 NKPSSSAPRVVVVASTN 172
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIA 663
P R EIL++HT+NM LGDDVDL +IA
Sbjct: 458 PDLEARFEILQVHTRNMTLGDDVDLRKIA 486
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP 580
R ++IDPALRR GRFD +++ P
Sbjct: 173 RVDAIDPALRRAGRFDALVEVSTP 196
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/79 (43%), Positives = 48/79 (60%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DD+ G + ++E V LPL P F+ I +P +G+LM+GPPGTGKTL+A+AVA
Sbjct: 236 VRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVAT 294
Query: 247 ETGLSSF*LMDRRSCLSWR 303
E G + F + WR
Sbjct: 295 ECGTTFFNVSSATLASKWR 313
Score = 51.2 bits (117), Expect = 6e-07
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT-HGEVERRI 437
FF ++ + SK GESE +R F+ A +P+ IFIDE+D++ R + E RR+
Sbjct: 300 FFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGGSGEHESSRRV 359
Query: 438 VSQLLTLMDGMKKSSH--------VIVMAATN 509
S+LL +DG+ ++ V+V+AATN
Sbjct: 360 KSELLVQVDGVSNTATNEDGSRKIVMVLAATN 391
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/78 (41%), Positives = 50/78 (64%)
Frame = +1
Query: 34 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 213
K + +E V + D+ G + +++E+V+ L++P + A+G K P+G L+ GPPGT
Sbjct: 248 KSKFQEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGT 306
Query: 214 GKTLIARAVANETGLSSF 267
GKTL+ARAVA E G+ F
Sbjct: 307 GKTLLARAVAGEAGVPFF 324
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG---EVER 431
FF E + G S +R FE+A +P I+FIDE+DA+ +R G +
Sbjct: 323 FFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDERE 382
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
+ ++QLLT MDG +S VIV+AATN
Sbjct: 383 QTINQLLTEMDGFSGNSGVIVLAATN 408
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIAAR 669
P GR++IL++H++ LG DVD +++A R
Sbjct: 432 PDVAGRVKILQVHSRGKALGKDVDFDKVARR 462
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
RP+ +D AL R GRFDR++ + P+
Sbjct: 409 RPDVLDSALLRPGRFDRQVTVDRPD 433
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 68.1 bits (159), Expect = 5e-12
Identities = 32/78 (41%), Positives = 50/78 (64%)
Frame = +1
Query: 34 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 213
K + +E V + D+ G + +++E+V+ L++P + A+G K P+G L+ GPPGT
Sbjct: 236 KSKFQEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGT 294
Query: 214 GKTLIARAVANETGLSSF 267
GKTL+ARAVA E G+ F
Sbjct: 295 GKTLLARAVAGEAGVPFF 312
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG---EVER 431
FF E + G S +R FE+A +P I+FIDE+DA+ +R G +
Sbjct: 311 FFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDERE 370
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
+ ++QLLT MDG +S VIV+AATN
Sbjct: 371 QTINQLLTEMDGFSGNSGVIVLAATN 396
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIAAR 669
P GR++IL++H++ +G DVD E++A R
Sbjct: 420 PDVAGRVQILKVHSRGKAIGKDVDYEKVARR 450
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
RP+ +D AL R GRFDR++ + P+
Sbjct: 397 RPDVLDSALLRPGRFDRQVTVDRPD 421
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = +1
Query: 34 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 213
K + + E + ++D+ G + +E+VE L+ P F A+G K P+G+L+ GPPGT
Sbjct: 209 KAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGT 267
Query: 214 GKTLIARAVANETGLSSF 267
GKTL+A+A+A E G+ F
Sbjct: 268 GKTLLAKAIAGEAGVPFF 285
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG---EVER 431
FF ++G E + G S R F +A NSP I+FIDE+DA+ R G +
Sbjct: 284 FFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGNDERE 343
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
+ ++Q+LT MDG ++ VIV+AATN
Sbjct: 344 QTLNQILTEMDGFAGNTGVIVIAATN 369
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
RP +D AL R GRFDR++ +G+P+
Sbjct: 370 RPEILDSALLRPGRFDRQVSVGLPD 394
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIAAR 669
P GR EIL++H+++ KL DV L IA R
Sbjct: 393 PDIRGREEILKVHSRSKKLDKDVSLSVIAMR 423
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPPRGILMYGPPGTGKTLIARAVA 243
V +DDIG + E+V LP+R P LF + ++P +GIL++GPPGTGKTL+A+A+A
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALA 206
Query: 244 NETG 255
E G
Sbjct: 207 TEAG 210
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKT-HGEVER 431
A F I G + SK G++E + F A K +P IIF+DE+D++ R E R
Sbjct: 211 ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATR 270
Query: 432 RIVSQLLTLMDGM--KKSSHVIVMAATN 509
R+ ++ + DG+ K S ++++ ATN
Sbjct: 271 RMRNEFMAAWDGLRSKDSQRILILGATN 298
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/69 (44%), Positives = 46/69 (66%)
Frame = +1
Query: 61 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
N + D+ GC +++E+VE L++PS F +G K P+GIL+ G PGTGKTL+A+A+
Sbjct: 357 NVKTFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI 415
Query: 241 ANETGLSSF 267
A E G+ F
Sbjct: 416 AGEAGVPFF 424
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
FF G E G +R F+ A K +P IIFIDE+DA+ R++ G ++ +
Sbjct: 423 FFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-KKTL 481
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
QLL MDG +++ +IVMAATN
Sbjct: 482 HQLLVEMDGFEQNEGIIVMAATN 504
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 512 PNSIDPALRRFGRFDREIDIGIPE 583
P+ +DPAL R GRFDR I + P+
Sbjct: 506 PDILDPALTRPGRFDRHIVVPSPD 529
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 562 DRH---RHPRANGRLEILRIHTQNMKLGDDVDLEQIA 663
DRH P GR EIL ++ Q + +DVD++ IA
Sbjct: 520 DRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIA 556
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 47/71 (66%)
Frame = +1
Query: 46 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL 225
++ + N + + D+ GC + +I E V L++P ++ +G K P+G L+ GPPGTGKTL
Sbjct: 312 DKHSKNKIYFKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTL 370
Query: 226 IARAVANETGL 258
+A+A A E+G+
Sbjct: 371 LAKATAGESGV 381
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREK--THGEVERR 434
F I+G + M G S +R F+EA + +P+IIFIDE+DAI R + G ER
Sbjct: 383 FLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGNDERE 442
Query: 435 -IVSQLLTLMDGMKKSSHVIVMAATN 509
++QLL MDG ++ V+V+A TN
Sbjct: 443 STLNQLLVEMDGFGTTAGVVVLAGTN 468
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 500 GHERPNSIDPALRRFGRFDREIDIGIPE 583
G RP+ +D AL R GRFDR+I I P+
Sbjct: 466 GTNRPDILDKALLRPGRFDRQITIDKPD 493
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +1
Query: 40 EEEEEALNA-VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 216
EE + ++++ + D+ G + A+++E+V LR P F +G K P+G+L+ GPPGTG
Sbjct: 214 EEVQPSMDSSTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTG 272
Query: 217 KTLIARAVANETGLSSF 267
KT++ARA+A E G+ F
Sbjct: 273 KTMLARAIAGEAGVPFF 289
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIV 440
FF +G E G +R F A K SP IIFIDE+DAI R + + +
Sbjct: 288 FFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSRNPKDQQYMKMTL 347
Query: 441 SQLLTLMDGMKKSSHVIVMAATN 509
+Q+L +DG K++ +IV+AATN
Sbjct: 348 NQMLVELDGFKQNEGIIVVAATN 370
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 512 PNSIDPALRRFGRFDREIDIGIPE 583
P S+D AL R GRFDR I + P+
Sbjct: 372 PESLDKALVRPGRFDRHIVVPNPD 395
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 64.9 bits (151), Expect = 5e-11
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR---EKTHGEVER 431
FF I+ ++SK G+SE +R F+ A ++P+ IF+DE+DAI +R ++ E R
Sbjct: 173 FFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASR 232
Query: 432 RIVSQLLTLMDGMKKSSH-VIVMAATN 509
R+ ++LL MDG++K++ V V+AATN
Sbjct: 233 RLKTELLIQMDGLQKTNELVFVLAATN 259
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ ++ I G +KE V +P+++P+ F + + P +GIL++GPPGTGKT++A+AVA
Sbjct: 109 IKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAVAT 167
Query: 247 ETGLSSF*LMDRRSCLSWR 303
E + F + WR
Sbjct: 168 ECNTTFFNISASSVVSKWR 186
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 64.9 bits (151), Expect = 5e-11
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR---EKTHGEVER 431
FF I+ ++SK G+SE +R F+ A ++P+ IF+DE+DAI +R ++ E R
Sbjct: 164 FFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASR 223
Query: 432 RIVSQLLTLMDGMKKSSH-VIVMAATN 509
R+ ++LL MDG++K++ V V+AATN
Sbjct: 224 RLKTELLIQMDGLQKTNELVFVLAATN 250
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ ++ I G +KE V +P+++P+ F + + P +GIL++GPPGTGKT++A+AVA
Sbjct: 100 IKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAVAT 158
Query: 247 ETGLSSF*LMDRRSCLSWR 303
E + F + WR
Sbjct: 159 ECNTTFFNISASSVVSKWR 177
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 64.9 bits (151), Expect = 5e-11
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR-EKTHGEVERRI 437
FF ++ +++SK GESE + FE A +++P+IIF+DE+D++ R E E RRI
Sbjct: 193 FFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRI 252
Query: 438 VSQLLTLMDGM-KKSSHVIVMAATN 509
++LL M G+ V+V+AATN
Sbjct: 253 KTELLVQMQGVGHNDEKVLVLAATN 277
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ + D+ G ++E V LP++ P F +P R L+YGPPGTGK+ +A+AVA
Sbjct: 129 IKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYLAKAVAT 187
Query: 247 ETGLSSF 267
E + F
Sbjct: 188 EADSTFF 194
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPPRGILMYGPPGTGKTLIARAVA 243
V ++DIG + E+V LP+R P LF + ++P +GIL++GPPGTGKTL+A+A+A
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALA 407
Query: 244 NETG 255
E G
Sbjct: 408 TEAG 411
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR-EKTHGEVER 431
A F I G + SK G++E + F A K +P IIF+DE+D++ R + E R
Sbjct: 412 ANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEIDSLLGARGGSSEHEATR 471
Query: 432 RIVSQLLTLMDGM--KKSSHVIVMAATN 509
R+ ++ + DG+ K S ++++ ATN
Sbjct: 472 RMRNEFMAAWDGLRSKDSQRILILGATN 499
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPPRGILMYGPPGTGKTLIARAVA 243
V +DDIG +KE+V LP + P LF K KP GIL++GP GTGKT++A+AVA
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVA 791
Query: 244 NETG 255
E G
Sbjct: 792 TEAG 795
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 288 MSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPK-REKTHGEVERRIVSQLLTLMD 464
MS+ E E ++ F A K SP+IIF+DE++++ + R KT E + D
Sbjct: 803 MSRWFSEGEKYVKAVFSLASKISPSIIFLDEVESMLHRYRLKTKNE--------FIINWD 854
Query: 465 GMK--KSSHVIVMAATN 509
G++ + V+V+AATN
Sbjct: 855 GLRTNEKERVLVLAATN 871
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/71 (38%), Positives = 46/71 (64%)
Frame = +1
Query: 46 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL 225
++ + N + + D+ GC + +I E V L++P ++ +G K P+G L+ GPPGTGKTL
Sbjct: 317 DKNSKNKIYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTL 375
Query: 226 IARAVANETGL 258
+A+A A E+ +
Sbjct: 376 LAKATAGESAV 386
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREK---THGEVER 431
F I+G + M G S +R F+EA + +P+IIFIDE+DAI R + + G ER
Sbjct: 388 FLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDER 447
Query: 432 R-IVSQLLTLMDGMKKSSHVIVMAATN 509
++QLL MDG ++ V+V+A TN
Sbjct: 448 ESTLNQLLVEMDGFGTTAGVVVLAGTN 474
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 500 GHERPNSIDPALRRFGRFDREIDIGIPE 583
G RP+ +D AL R GRFDR+I I P+
Sbjct: 472 GTNRPDILDKALLRPGRFDRQITIDKPD 499
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 63.3 bits (147), Expect = 1e-10
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPPRGILMYGPPGTGKTLIARAV 240
V + IGG + E+V LPL+ P LF A G + P +G+L+YGPPGTGKT++A+A+
Sbjct: 81 VEFGSIGGLETIKQALYELVILPLKRPELF-AYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139
Query: 241 ANETG 255
A E+G
Sbjct: 140 AKESG 144
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 434
A F + +MSK G+++ + F A K PAIIFIDE+++ +R T E
Sbjct: 145 AVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVESFLGQRRSTDHEAMAN 204
Query: 435 IVSQLLTLMDGMKKSSH--VIVMAATN 509
+ ++ + L DG H V+V+AATN
Sbjct: 205 MKTEFMALWDGFSTDPHARVMVLAATN 231
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +3
Query: 285 IMSKLAGESESNLRKAFEEADK-NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 461
+MSK GESE L F +A++ AIIF+DE+DA A R+ E RR++S LL +
Sbjct: 397 VMSKYYGESERLLGAVFSQANELPDGAIIFLDEIDAFAISRDSEMHEATRRVLSVLLRQI 456
Query: 462 DGMKKSSHVIVMAATN 509
DG ++ V+V+AATN
Sbjct: 457 DGFEQEKKVVVIAATN 472
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Frame = +1
Query: 49 EEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAI--GVKP------PRGILMYGP 204
+++++ + +D+I G +Q +I++ + + L P ++ I G + PR +L GP
Sbjct: 310 DDSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGP 369
Query: 205 PGTGKTLIARAVANETGL 258
PGTGKT AR +AN+ G+
Sbjct: 370 PGTGKTSCARVIANQAGI 387
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/61 (44%), Positives = 43/61 (70%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ + D+ G + +++E+VE LR+P + +G +PPRG+L+ G PGTGKTL+A+AVA
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAG 380
Query: 247 E 249
E
Sbjct: 381 E 381
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKRE---KTHGEVER 431
F + E + G S +R F A K +P+IIFIDE+DA+A R+ + ER
Sbjct: 386 FISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDER 445
Query: 432 -RIVSQLLTLMDGMKKSSHVIVMAATN 509
+ ++QLLT MDG +S VIV+ ATN
Sbjct: 446 EQTLNQLLTEMDGFDSNSAVIVLGATN 472
Score = 34.3 bits (75), Expect = 0.076
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPER 586
G R + +DPALRR GRFDR + + P++
Sbjct: 469 GATNRADVLDPALRRPGRFDRVVTVETPDK 498
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/72 (40%), Positives = 46/72 (63%)
Frame = +1
Query: 52 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIA 231
E V +DD G +++E+V + L++ F+ G+ P+G+L++GPPGTGKTL+A
Sbjct: 308 EEKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 366
Query: 232 RAVANETGLSSF 267
+A+A E GL F
Sbjct: 367 KAIAGEAGLPFF 378
Score = 56.4 bits (130), Expect = 2e-08
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR---EKTHGEVER 431
FF NG + + G + S ++ F + +P+IIFIDE+DAI KR + G ER
Sbjct: 377 FFAANGTDFVEMFVGVAASRVKDLFASSRSYAPSIIFIDEIDAIGSKRGGPDIGGGGAER 436
Query: 432 -RIVSQLLTLMDGMK-KSSHVIVMAATN 509
+ + Q+LT MDG K +S V+V+ ATN
Sbjct: 437 EQGLLQILTEMDGFKVTTSQVLVIGATN 464
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPER 586
G R + +DPAL R GRFD+ I +G+P +
Sbjct: 461 GATNRLDILDPALLRKGRFDKIIRVGLPSK 490
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/62 (41%), Positives = 44/62 (70%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ + D+ G + +++E+VE L++P + +G +PPRG+L+ G PGTGKTL+A+AVA
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAG 384
Query: 247 ET 252
E+
Sbjct: 385 ES 386
Score = 61.3 bits (142), Expect = 6e-10
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKRE----KTHGEVE 428
F + E + G S +R F A K +P+IIFIDE+DA+A R+ +
Sbjct: 390 FISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDER 449
Query: 429 RRIVSQLLTLMDGMKKSSHVIVMAATN 509
+ ++QLLT MDG SS VIV+ ATN
Sbjct: 450 EQTLNQLLTEMDGFDSSSAVIVLGATN 476
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 497 GGHERPNSIDPALRRFGRFDREIDIGIPER 586
G R + +DPALRR GRFDR + + P++
Sbjct: 473 GATNRADVLDPALRRPGRFDRVVTVESPDK 502
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPPRGILMYGPPGTGKTLIARAV 240
V + IGG + E+V LPL+ P LF A G + P +G+L+YGPPGTGKT++A+A+
Sbjct: 84 VEFGSIGGLESIKQALYELVILPLKRPELF-AYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142
Query: 241 ANET 252
A E+
Sbjct: 143 ARES 146
Score = 54.8 bits (126), Expect = 5e-08
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +3
Query: 249 NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVE 428
+ A F + +MSK G+++ + F A K PAIIFIDE+D+ +R T E
Sbjct: 146 SEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRSTDNEAM 205
Query: 429 RRIVSQLLTLMDGM--KKSSHVIVMAATN 509
+ ++ + L DG +++ V+V+AATN
Sbjct: 206 SNMKTEFMALWDGFTTDQNARVMVLAATN 234
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V + D+ G K +++E+V+ H +++ GVK P GIL+ GPPG GKTL+A+AVA
Sbjct: 407 VKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAG 465
Query: 247 ETGLSSF 267
E G++ F
Sbjct: 466 EAGVNFF 472
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKRE--KTHGEVER- 431
FF I+ + + G S +R ++EA +N+P+++FIDELDA+ +R K G ER
Sbjct: 471 FFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELDAVGRERGLIKGSGGQERD 530
Query: 432 RIVSQLLTLMDGMKKSSHVIVMAATN 509
++QLL +DG + VI +A+TN
Sbjct: 531 ATLNQLLVSLDGFEGRGEVITIASTN 556
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIP 580
RP+ +DPAL R GRFDR+I I P
Sbjct: 557 RPDILDPALVRPGRFDRKIFIPKP 580
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMKLGDDVDLEQIAA 666
P GR+EIL++H + + +D+D +A+
Sbjct: 580 PGLIGRMEILQVHARKKPMAEDLDYMAVAS 609
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 60.9 bits (141), Expect = 8e-10
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Frame = +3
Query: 267 LINGPEIMSKLAGESESNLRKAFEEADKNSPA--------IIFIDELDAIAPKREKTHG- 419
++NGPE++SK GE+E N+R F +A+++ +I DE+DAI R T
Sbjct: 281 IVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDG 340
Query: 420 -EVERRIVSQLLTLMDGMKKSSHVIVMAATN 509
V IV+QLLT +DG++ ++V+++ TN
Sbjct: 341 TGVHDSIVNQLLTKIDGVEALNNVLLIGMTN 371
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 82 IGGCRKQLAQI-KEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
IGG + A I + + P + +G+K +G+L++GPPGTGKTL+AR +
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQI 270
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 4/35 (11%)
Frame = +1
Query: 577 PRANGRLEILRIHTQNMK----LGDDVDLEQIAAR 669
P GRL+IL+IHT MK LG D++L+++AAR
Sbjct: 395 PDEAGRLQILQIHTNKMKENSFLGTDINLQELAAR 429
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +3
Query: 249 NRAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVE 428
++A FF ++ + SK GE+E ++ F+ A P++IF+DE+D+I R + E
Sbjct: 273 SQATFFNVSASSLTSKWVGEAEKLVKTLFQVAISRQPSVIFMDEIDSIMSTRSTSENEAS 332
Query: 429 RRIVSQLLTLMDGMKKSSH--VIVMAATN 509
RR+ S+ L DG+ + VI++ ATN
Sbjct: 333 RRLKSEFLIQFDGVTSNPDDLVIIIGATN 361
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +1
Query: 64 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVA 243
+V +DD+ G + EMV LP + LF + +P RG+L++GPPG GKT++A+AVA
Sbjct: 212 SVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVA 270
Query: 244 NETGLSSF 267
+E+ + F
Sbjct: 271 SESQATFF 278
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = +1
Query: 67 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
V +DDI G + EMV PL P +FK P +G+L++GPPGTGKT+I +A+A
Sbjct: 7 VRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPGTGKTMIGKAIAG 65
Query: 247 ETGLSSF 267
E + F
Sbjct: 66 EAKATFF 72
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +3
Query: 252 RAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVE- 428
+A FF I+ + SK GE E +R F A PA+IF+DE+D++ +R K+ GE E
Sbjct: 68 KATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQR-KSDGEHES 126
Query: 429 -RRIVSQLLTLMDGMKK-SSHVIVMAATN 509
RR+ +Q L M+G S ++++ ATN
Sbjct: 127 SRRLKTQFLIEMEGFDSGSEQILLIGATN 155
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +3
Query: 303 GESESNLRKAFEEADKNSPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGMK 473
G+S +N+R+ F+ A +P IIF+++ D A R K T + ++QLL +DG +
Sbjct: 500 GQSAANVRELFQTARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVELDGFE 559
Query: 474 KSSHVIVMAAT 506
K V++MA T
Sbjct: 560 KQDGVVLMATT 570
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 109 QIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANE 249
+I E+V L++P F+ +G + PRG+L+ G GTGKT +A A+A E
Sbjct: 435 EINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE 480
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 136 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+R +K +G RG L+YGPPGTGKT + A+AN
Sbjct: 231 IRRKDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIAN 267
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETGL 258
RG+L+ GPPGTGKTL AR +A E+GL
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESGL 552
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 261 FFLINGPEIM-SKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI 437
F +G E S+ +G ++ N + F A +N+PA +F+DE+DAIA + + R
Sbjct: 554 FVFASGAEFTDSEKSGAAKIN--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRAT 610
Query: 438 VSQLLTLMDGMKKSSHV 488
L+ +DG K+ + +
Sbjct: 611 FEALIAQLDGEKEKTGI 627
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 509 RPNSIDPALRRFGRFDREIDIGIPE 583
RP+ +D R GR DR + IG+P+
Sbjct: 644 RPDELDLEFVRSGRIDRRLYIGLPD 668
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 175 PPRGILMYGPPGTGKTLIARAVANETGL 258
P R ++ YGPPGTGKT++AR +A ++GL
Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKSGL 396
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 175 PPRGILMYGPPGTGKTLIARAVANETGL 258
P R ++ YGPPGTGKT++AR +A ++GL
Sbjct: 384 PFRNMMFYGPPGTGKTMVAREIARKSGL 411
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1
Query: 175 PPRGILMYGPPGTGKTLIARAVANETGL 258
P R IL YGPPGTGKT+ AR +A +GL
Sbjct: 397 PFRNILFYGPPGTGKTMAARELARRSGL 424
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAII-FIDELDAIAPKREKTHGEVERRI 437
+ L+ G ++ + L ++ + + + F+ + K+ ++ FIDE DA +R KT+ +R
Sbjct: 426 YALMTGGDV-APLGAQAVTKIHQLFDWSKKSKRGLLLFIDEADAFLCERNKTYMSEAQRS 484
Query: 438 VSQLLTLMDGMKKSSHVIVMAATN 509
L G +S +++ ATN
Sbjct: 485 ALNALLFRTG-DQSKDIVLALATN 507
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 136 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+R +K +G RG L+YGPPGTGK+ + A+AN
Sbjct: 239 IRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 136 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+R +K +G RG L+YGPPGTGK+ + A+AN
Sbjct: 239 IRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
FK +G RG L+YGPPGTGK+ + A+AN
Sbjct: 23 FKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +1
Query: 175 PPRGILMYGPPGTGKTLIARAVANETGL 258
P R IL++GPPGTGKT+ AR +A ++GL
Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKSGL 423
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPAII-FIDELDAIAPKREKTHGEVERRI 437
+ L+ G ++ + L ++ + + + F+ K+ ++ FIDE DA +R KT+ +R
Sbjct: 425 YALMTGGDV-APLGAQAVTKIHELFDWGKKSKRGLLLFIDEADAFLCERNKTYMSEAQRS 483
Query: 438 VSQLLTLMDGMKKSSHVIVMAATN 509
L G +S +++ ATN
Sbjct: 484 ALNALLFRTG-DQSKDIVLALATN 506
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 109 QIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+I + +E L+ +K +G RG L+YGPPGTGK+ + A+AN
Sbjct: 220 KIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 265
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
FK++G RG L+YGPPGTGK+ + A+AN
Sbjct: 231 FKSVGRAWKRGYLLYGPPGTGKSSMVAAIAN 261
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 109 QIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+I + +E L+ +K +G RG L+YGPPGTGK+ + A+AN
Sbjct: 221 KIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 266
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 112 IKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ E ++ ++ +K +G RG L+YGPPGTGK+ + A+AN
Sbjct: 277 VMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 321
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+K IG RG L+YGPPGTGK+ + A+AN
Sbjct: 233 YKKIGKAWKRGYLLYGPPGTGKSTMISAMAN 263
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+K +G RG L+YGPPGTGK+ + A+AN
Sbjct: 237 YKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 267
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+K IG RG L+YGPPGTGK+ + A+AN
Sbjct: 228 YKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 43 EEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKT 222
++++ L A G + +K E + L P + + G PP +++ GPPG GK+
Sbjct: 38 DKQKNLKAFGVKSVVHAKKAKHHAAEKEQKRLHLPKIDRNYGEAPPFVVVVQGPPGVGKS 97
Query: 223 LIARAVANE 249
L+ +++ E
Sbjct: 98 LVIKSLVKE 106
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVANETGLSSF 267
+K IG RG L++GPPGTGK+ + A+AN S +
Sbjct: 228 YKKIGKAWKRGYLLHGPPGTGKSTMIAAMANHLNYSIY 265
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+K +G RG L++GPPGTGK+ + A+AN
Sbjct: 235 YKKVGKPWKRGYLLFGPPGTGKSTMIAAIAN 265
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+K IG RG L++GPPGTGK+ + A+AN
Sbjct: 235 YKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 265
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+K IG RG L++GPPGTGK+ + A+AN
Sbjct: 232 YKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 262
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 97 KQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
K + + E ++ ++ +K +G R +YGPPGTGK+ + A+AN
Sbjct: 193 KLKSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMAN 242
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 136 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
++ + +G RG L+YGPPGTGK+ + A+AN
Sbjct: 233 VQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIAN 269
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETG 255
RG L+YGPPGTGK+ + A+AN G
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLG 263
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+ IG RG L+YGPPGTGK+ + A+AN
Sbjct: 228 YDRIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETG 255
RG L+YGPPGTGK+ + A+AN G
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLG 262
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 148 SLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
S ++ G RG L+YGPPGTGK+ + A+AN
Sbjct: 227 SFYERTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Frame = +3
Query: 270 INGPEIMSKLAGESESNLRKAFEEADK-----NSPAIIFIDELDAIAPKREKTHGEVER- 431
+N + SK ES + K F++ + + + IDE++++A R+ E
Sbjct: 242 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEDGNLVFVLIDEVESLAAARKAALSGSEPS 301
Query: 432 ---RIVSQLLTLMDGMKKSSHVIVMAATN 509
R+V+ LLT MD +K + +VI++ +N
Sbjct: 302 DSIRVVNALLTQMDKLKSAPNVIILTTSN 330
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = +1
Query: 151 LFKAIGVKPP-----RGILMYGPPGTGKTLIARAVANETGL 258
LF GV P R IL++GPPGTGKT + +A+A + +
Sbjct: 188 LFTQKGVNPNLVSWNRIILLHGPPGTGKTSLCKALAQKLSI 228
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 154 FKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
++ +G RG L++GPPGTGK+ + A+AN
Sbjct: 231 YRKVGKPWKRGYLLFGPPGTGKSTMISAMAN 261
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 46 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL 225
E+E N VG ++ + QL + + + L R +L IG + P + G PGTGKT+
Sbjct: 204 EDELSNIVGLSEL---KTQLRKWAKGMLLDERRRALGLNIGTRRPPHMAFLGNPGTGKTM 260
Query: 226 IARAV 240
+AR +
Sbjct: 261 VARVL 265
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVAN 246
RG L++GPPGTGK+ + A+AN
Sbjct: 229 RGYLLFGPPGTGKSTMISAIAN 250
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 160 AIGVKPPRGILMYGPPGTGKTLIARAVANETG 255
++ V R +L+YGP G+GK+ + R +A+E+G
Sbjct: 347 SLAVSQKRPVLLYGPSGSGKSALIRKLADESG 378
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVA--NETGLSS 264
+KP R L+ GPPG+GK+ + +A++ ETGL S
Sbjct: 169 IKPGRLTLLLGPPGSGKSTLLKALSGKTETGLRS 202
>At2g41860.2 68415.m05174 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 530
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 309 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 467
++ +L+KAF DKN I I+EL DA+A + T EV I+ + T DG
Sbjct: 428 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 481
>At2g41860.1 68415.m05173 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 425
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 309 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 467
++ +L+KAF DKN I I+EL DA+A + T EV I+ + T DG
Sbjct: 323 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 376
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANE 249
+L YGPPGTGKT A A+A++
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQ 53
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANE 249
+L YGPPGTGKT A A+A++
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQ 65
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETGLSS 264
R IL+ G PGTGKT IA +A GL +
Sbjct: 67 RAILIAGQPGTGKTAIAMGMAKSLGLET 94
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETG 255
+ +L+ GPPGTGKT +A ++ E G
Sbjct: 67 KALLLAGPPGTGKTALALGISQELG 91
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 109 QIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
++K +E L+ + +G R L+YGP GTGK+ A+AN
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMAN 253
>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
(CPK9) identical to calmodulin-domain protein kinase
CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 541
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 306 ESESNLRKAFEEADKNSPAIIFIDELDA 389
ES NL KAF+ DK+S I IDEL++
Sbjct: 464 ESNENLYKAFQHFDKDSSGYITIDELES 491
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANET 252
I+ +GPPGTGKT IA+++ N +
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSS 161
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANE 249
+L+YGPPGTGKT AVA +
Sbjct: 75 LLLYGPPGTGKTSTILAVARK 95
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
VKP R L+ GPP +GKT + +A+A +
Sbjct: 198 VKPSRMTLLLGPPSSGKTTLLQALAGK 224
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANE 249
L+H S +IG R I++YG G GKT +A+ NE
Sbjct: 195 LQHISSLLSIGSDGVRVIVIYGMGGIGKTTLAKVAFNE 232
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 43 EEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGIL-MYGPPGTGK 219
E EA+ G CR+ IK +V + + + + RGI+ +YGP G GK
Sbjct: 131 ERSEAIKTDGGSIQVTCRE--IPIKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGK 188
Query: 220 TLIARAVANE 249
T + +++ NE
Sbjct: 189 TTLMQSINNE 198
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
+KP R L+ GPP +GKT + +A+A +
Sbjct: 196 IKPSRMTLLLGPPSSGKTTLLQALAGK 222
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANE 249
R I ++GPPG GKT IAR V N+
Sbjct: 258 RIIGIWGPPGIGKTTIARVVYNQ 280
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 30.7 bits (66), Expect = 0.94
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN-- 246
+DD+ G + ++K ++ L H + K IG+ +GP G GKT IAR + N
Sbjct: 228 FDDLIGMEAHMEKMKSLLSL---HSNEVKMIGI--------WGPSGIGKTTIARVLYNRF 276
Query: 247 --ETGLSSF 267
+ GLS F
Sbjct: 277 SGDFGLSVF 285
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
V+P R L+ GPPG GKT + +A++ +
Sbjct: 164 VRPGRMTLLLGPPGCGKTTLLQALSGK 190
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANE 249
+DD+ G + ++K ++++ K IG+ +GPPG GKT IAR++ N+
Sbjct: 234 FDDLIGMGDHMEKMKPLLDIDSDE---MKTIGI--------WGPPGVGKTTIARSLYNQ 281
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
+KP R L+ GPPG+GK+ + A+A +
Sbjct: 183 IKPGRMTLLLGPPGSGKSTLLLALAGK 209
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
VKP R L+ GPP +GKT + A+A +
Sbjct: 192 VKPSRMTLLLGPPSSGKTTLLLALAGK 218
>At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. False intron
created at intron 2 to escape a frameshift in the BAC
sequence.
Length = 1165
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 91 CRKQLAQIKEM-----VELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
C+ LA K+ +E+ L+ S + K R + ++GP G GKT IARA+
Sbjct: 171 CKLNLAPSKDFDDFVGLEVHLKDMSSLLCLDSKEVRMVGIWGPSGIGKTTIARAL 225
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVA 243
V+P R L+ GPPG GKT + +A++
Sbjct: 161 VRPGRMTLLLGPPGCGKTTLLQALS 185
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
+KP R L+ GPP +GKT + A+A +
Sbjct: 170 IKPSRMTLLLGPPSSGKTTLLLALAGK 196
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANETG 255
++P R L+ GPP +GKT + A+A G
Sbjct: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANETG 255
V+ +L+ GPPG GKT + R VA G
Sbjct: 194 VQDGNSLLLIGPPGVGKTTMIREVARMLG 222
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
VKP R L+ GPP +GKT + A+A +
Sbjct: 177 VKPGRMALLLGPPSSGKTTLLLALAGK 203
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 291 SKLAGESESNLRKAFEEADKNSPAIIFIDELDAI 392
+K GE E L+K EE ++ I+FIDE+ +
Sbjct: 345 TKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTL 378
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
similar to disease resistance protein RPP1-WsB
(GI:3860165) [Arabidopsis thaliana]
Length = 1996
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 252
+DD+ G L ++K +++L + ++ +G+ GP G GKT IARA+ +
Sbjct: 141 FDDMVGLEAHLEEMKYLLDLDYKDGAMI--VGI--------CGPAGIGKTTIARALYSLL 190
Query: 253 GLSSF*LMDRRSCLSWRENR 312
LSSF L LS +NR
Sbjct: 191 -LSSFQLSCFVENLSGSDNR 209
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 291 SKLAGESESNLRKAFEEADKNSPAIIFIDELDAI 392
+K GE E L+K EE ++ I+FIDE+ +
Sbjct: 366 TKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTL 399
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANE 249
+KP R L+ GPP +GKT + A+A +
Sbjct: 194 IKPGRMTLLLGPPSSGKTTLLLALAGK 220
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 103 LAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVA 243
L+ +KE + L ++ + G + I + GPPG GKT I R++A
Sbjct: 435 LSDVKERI---LEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGRSIA 478
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 148 SLFKAIG--VKPPRGILMYGPPGTGKTLIARAVA 243
S+ K + ++P R L+ GPPG GKT + A++
Sbjct: 150 SILKGVSGIIRPKRMTLLLGPPGCGKTTLLLALS 183
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 124 VELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 246
+E ++ SL + + R + ++GP G GKT IARA+ N
Sbjct: 184 IEDHIKELSLLLCLESEEVRMVGIWGPTGIGKTTIARALFN 224
>At3g53590.1 68416.m05919 leucine-rich repeat transmembrane protein
kinase, putative CLV1 receptor kinase, Arabidopsis
thaliana, EMBL:ATU96879
Length = 783
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 390 IAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNGRTPST 527
+ +RE +H ++R+ + + G+KK S V + ATNG ST
Sbjct: 394 VRKRRENSHTLTKKRVFRTISREIKGVKKFSFVELSDATNGFDSST 439
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETG 255
R IL+ G PGTGK IA +A G
Sbjct: 67 RAILIAGQPGTGKIAIAMGIAKSLG 91
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANE 249
R I ++GPPG GKT IAR + N+
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQ 312
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANE 249
R I ++GPPG GKT IAR + N+
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQ 312
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANE 249
R I ++GPPG GKT IAR + N+
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQ 312
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANE 249
R I ++GPPG GKT IAR + N+
Sbjct: 294 RMIGIWGPPGIGKTTIARFLFNQ 316
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 267 LINGPEIMSKLAGESESNLRKAFEEADKNS--PAIIFIDELDAIAPKREKTHGEVERRI 437
+I G ++ S + E+E +RK+ E D +S P ++F+ ++ AI K G R+
Sbjct: 367 IIGGDDVDSSVLAEAEL-VRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERM 424
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 103 LAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVA 243
L+ +KE + L ++ + G + I + GPPG GKT I R++A
Sbjct: 418 LSDVKERI---LEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGRSIA 461
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANE 249
R I + GPPG GKT IARA+ ++
Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQ 237
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVA 243
+ P R L+ GPPG GKT + +A++
Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLKALS 186
>At1g50700.1 68414.m05701 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 521
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 306 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 464
ES N+ KAF+ DK+ I DEL+A K +G + + ++L+ +D
Sbjct: 446 ESNENVYKAFQHFDKDGSGYITTDELEAAL----KEYGMGDDATIKEILSDVD 494
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVA 243
IL+ GP G+GKTL+A+ +A
Sbjct: 226 ILLMGPTGSGKTLLAKTLA 244
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/82 (23%), Positives = 39/82 (47%)
Frame = +1
Query: 4 TRIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR 183
+R C + +E + + Y + G +L +I++M+ + P + +G+
Sbjct: 116 SRKECSDSQLVKETVRDVYEKLFYMERIGIYSKLLEIEKMIN---KQPLDIRCVGI---- 168
Query: 184 GILMYGPPGTGKTLIARAVANE 249
+G PG GKT +A+AV ++
Sbjct: 169 ----WGMPGIGKTTLAKAVFDQ 186
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/82 (23%), Positives = 39/82 (47%)
Frame = +1
Query: 4 TRIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR 183
+R C + +E + + Y + G +L +I++M+ + P + +G+
Sbjct: 116 SRKECSDSQLVKETVRDVYEKLFYMERIGIYSKLLEIEKMIN---KQPLDIRCVGI---- 168
Query: 184 GILMYGPPGTGKTLIARAVANE 249
+G PG GKT +A+AV ++
Sbjct: 169 ----WGMPGIGKTTLAKAVFDQ 186
>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 193 MYGPPGTGKTLIARAVANETGLSSF 267
++GP G GKT IARA+ ++ SSF
Sbjct: 202 IWGPAGIGKTTIARALFDDRLSSSF 226
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVA 243
+KP R L+ GPP GKT + +A++
Sbjct: 197 IKPGRLTLLLGPPSCGKTTLLKALS 221
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 124 VELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVA 243
++L + +K +G R L++G PG GKT + A+A
Sbjct: 181 IDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIA 220
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETGLS 261
R I ++GPPG GKT IAR + ++ S
Sbjct: 224 RMIGIWGPPGIGKTTIARFLLSQVSKS 250
>At2g34440.1 68415.m04225 MADS-box family protein similar to
SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon};
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 172
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 267 LINGPEIMSKLAGE-SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI 437
L+N K GE S+ L A +E K S + +DEL+ + + HG +E ++
Sbjct: 100 LLNQEVEAEKERGEKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQV 157
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVANETGLSSF 267
R I ++GPPG GKT I R + N+ SSF
Sbjct: 252 RMIGIWGPPGIGKTTIVRFLYNQLS-SSF 279
>At2g01320.4 68415.m00049 ABC transporter family protein
Length = 725
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVANETGLS 261
KP R + + GP G+GKT + +A + LS
Sbjct: 99 KPGRLLAIMGPSGSGKTTLLNVLAGQLSLS 128
>At2g01320.3 68415.m00047 ABC transporter family protein
Length = 728
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVANETGLS 261
KP R + + GP G+GKT + +A + LS
Sbjct: 99 KPGRLLAIMGPSGSGKTTLLNVLAGQLSLS 128
>At2g01320.2 68415.m00046 ABC transporter family protein
Length = 727
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVANETGLS 261
KP R + + GP G+GKT + +A + LS
Sbjct: 99 KPGRLLAIMGPSGSGKTTLLNVLAGQLSLS 128
>At2g01320.1 68415.m00048 ABC transporter family protein
Length = 725
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVANETGLS 261
KP R + + GP G+GKT + +A + LS
Sbjct: 99 KPGRLLAIMGPSGSGKTTLLNVLAGQLSLS 128
>At1g61950.1 68414.m06988 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase GI:3283996 from [Nicotiana tabacum]; contains
protein kinase domain, Pfam:PF00069; contains EF hand
domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 551
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 288 MSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 467
M++ E E NL KAF+ DK++ I EL+ + + + I+S++ DG
Sbjct: 466 MNRFRVEREDNLFKAFQHFDKDNSGFISRQELETAMKEYNMGDDIMIKEIISEVDADNDG 525
>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1556
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +1
Query: 19 DGEPIKREEEEEALNAVGYDDIGGCRKQ---LAQIKEMVELPLRHPSLFKAIGVKPPRGI 189
D E I RE+ ++ ++ V + R + +A +E P++ L K + GI
Sbjct: 327 DNEGINREKVDDMIDLVVKKVVAAVRNRPEIVADYTVGLESPIK--DLMKLFNTESSSGI 384
Query: 190 L---MYGPPGTGKTLIARAVANE 249
+YG G GKT +A+A N+
Sbjct: 385 QVMGLYGMGGIGKTTLAKAFYNK 407
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 73 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 198
+ D KQ Q E++ +RHP L +G P RG L+Y
Sbjct: 459 HSDKSSLTKQFHQELEILS-KIRHPHLLLLLGACPERGSLVY 499
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVA 243
+L+ GP G+GKTL+A+ +A
Sbjct: 265 VLLLGPTGSGKTLLAKTLA 283
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLI 228
V P +G+ +YG GTGKT++
Sbjct: 130 VSPVKGLYLYGGVGTGKTML 149
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 193 MYGPPGTGKTLIARAVANE 249
++GP G GKT IARA+ N+
Sbjct: 210 IWGPAGVGKTTIARALYNQ 228
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANE 249
+++ GPPGTGKT A+A+E
Sbjct: 51 LILSGPPGTGKTTSILALAHE 71
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVA 243
+L+ GP G+GKTL+A+ +A
Sbjct: 311 VLLMGPTGSGKTLLAKTLA 329
>At1g05990.1 68414.m00627 calcium-binding protein, putative strong
similarity to calcium-binding protein [Lotus japonicus]
GI:18413495; contains INTERPRO:IPR002048 calcium-binding
EF-hand domain
Length = 150
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 306 ESESNLRKAFEEADKNSPAIIFIDELDAI 392
E E ++++AF D+N I +DEL A+
Sbjct: 75 EEEEDMKEAFNVFDQNGDGFITVDELKAV 103
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 193 MYGPPGTGKTLIARAVANETGLSSF 267
+YGP G GKT IARA+ + SSF
Sbjct: 215 IYGPAGIGKTTIARALHSRLS-SSF 238
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 193 MYGPPGTGKTLIARAVANE 249
++GP G GKT IARA+ N+
Sbjct: 210 IWGPAGIGKTTIARALYNQ 228
>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Non-consensus TT donor splice site at exon 1
Length = 1104
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 193 MYGPPGTGKTLIARAVANE 249
++GP G GKT IARA+ N+
Sbjct: 211 IWGPAGIGKTTIARALFNQ 229
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 160 AIGVKPPRGILMY-GPPGTGKTLIARAV 240
A+GV R +++ GPPGTGKT + + V
Sbjct: 496 ALGVNKKRPVMIVQGPPGTGKTGMLKEV 523
>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 780
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 61 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
++ ++D+ G +A +K M+ L K IGV +GP G GKT I R +
Sbjct: 183 SSTDFEDLLGLEAHVANLKSMLGLESNE---VKMIGV--------WGPAGIGKTTITRIL 231
Query: 241 ANETGLSS 264
N+ S+
Sbjct: 232 YNQLSSSN 239
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAVAN 246
R I ++G PG GKT +A+AV N
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFN 211
>At4g27420.1 68417.m03941 ABC transporter family protein
D.melanogaster P element CaSpeR-1 gene (white
protein),PID:g870996
Length = 639
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVANETG 255
VKP + M GP G+GKT + A+ G
Sbjct: 75 VKPGEILAMLGPSGSGKTSLLTALGGRVG 103
>At3g57530.1 68416.m06406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 538
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 309 SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 488
++ +L+KAF D+N+ I I+EL T EV I+ + T DG
Sbjct: 437 NDEHLKKAFAFFDQNNNGYIEIEELREALSDELGTSEEVVDAIIRDVDTDKDGRISYEEF 496
Query: 489 IVMAAT 506
+ M T
Sbjct: 497 VTMMKT 502
>At3g25620.1 68416.m03189 ABC transporter family protein similar to
GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
6 (4), 343-356 (1997))
Length = 467
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 169 VKPPRGILMYGPPGTGKTLIARAVA 243
VKP + M GP G+GKT + A+A
Sbjct: 107 VKPGELLAMLGPSGSGKTTLVTALA 131
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 27.9 bits (59), Expect = 6.6
Identities = 28/72 (38%), Positives = 36/72 (50%)
Frame = +1
Query: 25 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 204
E I R+ E+ LN D G A +KEM E+ L F GVK + ++GP
Sbjct: 164 EKIARDVSEK-LNMTPSSDFDGMVGIEAHLKEM-EVLLD----FDYDGVKI---VGIFGP 214
Query: 205 PGTGKTLIARAV 240
G GKT IARA+
Sbjct: 215 AGIGKTTIARAL 226
>At1g21550.1 68414.m02695 calcium-binding protein, putative contains
similarity to calcium-binding protein GB:CAB63264
GI:6580549 from [Lotus japonicus]
Length = 155
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 315 SNLRKAFEEADKNSPAIIFIDELDAIAPK---REKTHGEVERRIVSQLLTL 458
++LR+ F+ DKN ++ +DEL I K E T E+E + Q L L
Sbjct: 9 NDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDL 59
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 148 SLFKAIGVKPPRGILMYGPPGTGKTL 225
S+ +G K +++GPPGTGKT+
Sbjct: 404 SIEMVLGCKGAPPYVIHGPPGTGKTM 429
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 187 ILMYGPPGTGKTLIARAVANETGL 258
+L+ G PGTGK+ A A+A T L
Sbjct: 16 LLITGTPGTGKSTTASALAEATNL 39
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 190 LMYGPPGTGKTLIARAV 240
L+ GPPGTGKT+ + A+
Sbjct: 507 LIQGPPGTGKTVTSAAI 523
>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1008
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 148 SLFKAIGVKPPRGILMYGPPGTGKTLIARAV 240
SL + K R ++GP G GKT IARA+
Sbjct: 195 SLMLCLECKQVRMFGIWGPSGIGKTTIARAL 225
>At5g12480.1 68418.m01466 calmodulin-domain protein kinase isoform 7
(CPK7) identical to calmodulin-domain protein kinase
CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 535
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 309 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHG-EVERRIVSQLLTLMDGMKKSS 482
++ +L KAF D+N I IDEL +A+ + + T EV I+ + T DG
Sbjct: 433 NDEHLHKAFNFFDQNQSGYIEIDELREALNDELDNTSSEEVIAAIMQDVDTDKDGRISYE 492
Query: 483 HVIVM--AATNGRTPS 524
+ M A T+ R S
Sbjct: 493 EFVAMMKAGTDWRKAS 508
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 438 VSQLLTLMDGMKKSSHVIVMAATNGRTPSTRR 533
++Q+LT ++ + S H + A++ TP+ RR
Sbjct: 1004 IAQILTKLEIVTNSGHATTLTASDAATPTLRR 1035
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVANE 249
+P L GP G GKT +A+A+A +
Sbjct: 562 QPSGSFLFLGPTGVGKTELAKALAEQ 587
>At3g20200.1 68416.m02560 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 780
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 55 ALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 198
A+ A+ D + G R Q + E++ +RHP + IG P G+L+Y
Sbjct: 478 AIKALKADAVQG-RSQFQREVEVLSC-IRHPHMVLLIGACPEYGVLVY 523
>At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 531
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 181 RGILMYGPPGTGKTLIARAV 240
R I ++GPPG GKT IAR +
Sbjct: 262 RMIGIWGPPGIGKTSIARVL 281
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 172 KPPRGILMYGPPGTGKTLIARAVANE 249
+P L GP G GKT +A+A+A +
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALAEQ 622
>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 992
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 193 MYGPPGTGKTLIARAV 240
+YGP G GKT IARA+
Sbjct: 171 IYGPAGIGKTTIARAL 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,602
Number of Sequences: 28952
Number of extensions: 300900
Number of successful extensions: 1584
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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