Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021360
(692 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 176 5e-43
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 132 6e-30
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 120 3e-26
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 114 2e-24
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 114 2e-24
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 113 5e-24
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 111 1e-23
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 110 3e-23
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 108 1e-22
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 108 1e-22
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 105 1e-21
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 105 1e-21
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 100 7e-20
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 79 8e-14
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 41 0.025
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 40 0.044
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 40 0.076
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 39 0.10
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 39 0.10
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 39 0.13
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 39 0.13
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 38 0.31
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 37 0.41
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 36 0.71
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 33 5.0
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 33 5.0
UniRef50_Q96TV0 Cluster: Mig1 protein; n=1; Debaryomyces occiden... 33 5.0
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 33 6.6
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 33 6.6
UniRef50_UPI0000F308E9 Cluster: UPI0000F308E9 related cluster; n... 33 8.8
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 33 8.8
UniRef50_Q98EC2 Cluster: Mll4310 protein; n=20; Alphaproteobacte... 33 8.8
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 176 bits (428), Expect = 5e-43
Identities = 105/178 (58%), Positives = 114/178 (64%), Gaps = 11/178 (6%)
Frame = +3
Query: 12 DYKTVAALMRNPGTPTPLKSATRGSSPINF--------HGSISLXXXAPKPSAL*HPNMT 167
DYKTVAALM P P L+ +G F +G+ +L APK + P +
Sbjct: 1252 DYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLL 1311
Query: 168 RNMT--RLYFRPPLPKDSVSXPPSFLTDFLL*RILGTFLFSSLCRAYKRHPNHKVPFQPX 341
RL FRP +S PS +LGTFLFSSLCRAYKRHPNHKVPFQP
Sbjct: 1312 SASIAKRLRFRPSFLPYRLS--PSD-------EVLGTFLFSSLCRAYKRHPNHKVPFQPD 1362
Query: 342 LFVECINLNEYSQLSNKTQAVIQANAN-VRPXWXYTAVRIFSKTQHKINEGSIFGP*K 512
LFVECINLNEYSQLSNKTQAVIQANAN P W YTAVRIFSKTQHKINEGSIFGP K
Sbjct: 1363 LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWK 1420
Score = 145 bits (351), Expect = 1e-33
Identities = 67/71 (94%), Positives = 67/71 (94%)
Frame = +2
Query: 41 EPRDPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRF 220
EPRDPDSLEIRHKGEFSNQFPWVDLPY AQTLSVIAPKHDSKYDPTLLSASIAKRLRF
Sbjct: 1262 EPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRF 1321
Query: 221 RXSFLPYRLSP 253
R SFLPYRLSP
Sbjct: 1322 RPSFLPYRLSP 1332
Score = 134 bits (325), Expect = 1e-30
Identities = 62/64 (96%), Positives = 62/64 (96%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
F P KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK
Sbjct: 1416 FGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 1475
Query: 677 PLQI 688
PLQI
Sbjct: 1476 PLQI 1479
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 132 bits (320), Expect = 6e-30
Identities = 75/212 (35%), Positives = 107/212 (50%), Gaps = 2/212 (0%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DP LEI + +SNQFP+++ P L+++AP H+ K DPTLL AS+AKRLRFR S
Sbjct: 1471 DPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQKQDPTLLHASLAKRLRFRDS 1530
Query: 230 FLPYRLSPLTNPWHISVFIXXXXXXXXXXXXXXXXARXFR*MYQSQ*VLTAFQQDSSCHP 409
PY ++ ++ F + +
Sbjct: 1531 TAPYTITAKDQALGYILYHSLQRAYCRSPEPVPFDPVLFASCIAENDFAQLTSKTQATIQ 1590
Query: 410 SERKCSSRXXVHCCPHIFKNSA*--NQRRLNFRPLKACQTLALMHDAIVLIFGPIKKYQR 583
+ S H IF + N+ L F KACQTLALMHD ++L+ GP+KKYQR
Sbjct: 1591 ANAFRSDPDWRHTFVRIFSKTQHKVNENSL-FTSWKACQTLALMHDYLILVLGPVKKYQR 1649
Query: 584 VFDSKDRPPNLFVYGGQTPYDLSRFASSHLKP 679
+ DS+DRP +L+++ GQTP+ LS + +HL P
Sbjct: 1650 ILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTP 1681
Score = 92.7 bits (220), Expect = 8e-18
Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Frame = +3
Query: 264 LGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANA-NVRPXWX 440
LG L+ SL RAY R P VPF P LF CI N+++QL++KTQA IQANA P W
Sbjct: 1543 LGYILYHSLQRAYCRSPE-PVPFDPVLFASCIAENDFAQLTSKTQATIQANAFRSDPDWR 1601
Query: 441 YTAVRIFSKTQHKINEGSIF 500
+T VRIFSKTQHK+NE S+F
Sbjct: 1602 HTFVRIFSKTQHKVNENSLF 1621
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 120 bits (289), Expect = 3e-26
Identities = 78/213 (36%), Positives = 107/213 (50%), Gaps = 5/213 (2%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DP+ E+ + + S QFPW D P+ Q S+IA KH DPTLL SI KRLRFR S
Sbjct: 1389 DPELKEVTRRDQTSAQFPWFDRPFSLSCQPSSLIAAKHSPSQDPTLLPFSIPKRLRFRKS 1448
Query: 230 FLPYRLSPLTNPWHISVFIXXXXXXXXXXXXXXXXARXFR*MYQSQ*VLTAFQQDSSCHP 409
P+ LS + +F ++ L + Q SS
Sbjct: 1449 DNPHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPA---LFAECIALNDYAQLSSKTQ 1505
Query: 410 SERKCS-SRXXVHCCPHIFKNSA*NQRRLN----FRPLKACQTLALMHDAIVLIFGPIKK 574
+ + SR K A +Q ++N F KACQTLALMHD ++L GP+KK
Sbjct: 1506 ATLVANHSRSDPDWRHTAVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSLGPVKK 1565
Query: 575 YQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHL 673
YQR+FD+ DRPP+L+ + G++P DLS + +HL
Sbjct: 1566 YQRIFDALDRPPHLYTHCGKSPADLSAWCQTHL 1598
Score = 106 bits (255), Expect = 4e-22
Identities = 47/82 (57%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQAN-ANVRPXW 437
+LG LF +LC+AY+R+P H PF P LF ECI LN+Y+QLS+KTQA + AN + P W
Sbjct: 1460 LLGNQLFFNLCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDW 1519
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
+TAV+IF+K+QHK+N+ SIFG
Sbjct: 1520 RHTAVKIFAKSQHKVNDASIFG 1541
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 114 bits (274), Expect = 2e-24
Identities = 54/82 (65%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANA-NVRPXW 437
ILG LF LCRAY R P H F P LF ECINLNE++QLS+KTQA I NA P W
Sbjct: 1545 ILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLNEFAQLSSKTQATIMGNARRSDPDW 1604
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
++AVRIFSKTQHK+NEGSIFG
Sbjct: 1605 RWSAVRIFSKTQHKVNEGSIFG 1626
Score = 86.2 bits (204), Expect = 7e-16
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHL 673
F KACQTLALMHDA+VLI GP+KKYQRVFD +DRP +L+++ G TP +S + HL
Sbjct: 1625 FGSWKACQTLALMHDAVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHL 1683
Score = 73.3 bits (172), Expect = 5e-12
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DP EI +G+ SNQFP +D + AQ +S++A H K DPTLL ASI KRLRFR S
Sbjct: 1474 DPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQDPTLLPASIQKRLRFRPS 1533
Query: 230 FLPYRLSP 253
PY+++P
Sbjct: 1534 DRPYQITP 1541
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 114 bits (274), Expect = 2e-24
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANAN-VRPXW 437
+LG LF SLCRAY R PN VPF P LF ECI+LNEY+QLS+KTQ+ I ANA+ P W
Sbjct: 1430 VLGLQLFHSLCRAYSRQPNSTVPFNPELFAECISLNEYAQLSSKTQSTIVANASRSDPDW 1489
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
+T V+IF+K QHK+N+GSIFG
Sbjct: 1490 RHTTVKIFAKAQHKVNDGSIFG 1511
Score = 81.8 bits (193), Expect = 1e-14
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHL 673
F KACQTLALMHD ++L+ GP+KKYQR+FD+ DRPPN++ + G+TP L + HL
Sbjct: 1510 FGSWKACQTLALMHDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHL 1568
Score = 76.2 bits (179), Expect = 7e-13
Identities = 35/67 (52%), Positives = 45/67 (67%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DP + EI HK + SNQFPW D P+ Q S+I+ KH +DPTLL ASI KRLRFR S
Sbjct: 1359 DPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDPTLLPASINKRLRFRPS 1418
Query: 230 FLPYRLS 250
P++++
Sbjct: 1419 DSPHQIT 1425
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 113 bits (271), Expect = 5e-24
Identities = 51/82 (62%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANAN-VRPXW 437
ILG+ L+ + CRAY R P PF P L+ ECINLNE++QLS+KTQA I ANAN P W
Sbjct: 1366 ILGSLLYEAWCRAYHRSPRDVEPFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDW 1425
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
++AVRIF+KTQHK+NEGS+FG
Sbjct: 1426 RWSAVRIFAKTQHKVNEGSLFG 1447
Score = 87.0 bits (206), Expect = 4e-16
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
F KACQTLALMHDA+VL+ GP+KKYQR FD +DRP L+V+ G TP++++ + +HL
Sbjct: 1446 FGSWKACQTLALMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLT 1505
Query: 677 P 679
P
Sbjct: 1506 P 1506
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/70 (57%), Positives = 50/70 (71%)
Frame = +2
Query: 44 PRDPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFR 223
P D +S E +GE SNQFP +D P+ AQT S++AP H+SK+DPTLL ASI KRLRFR
Sbjct: 1293 PTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSLLAPLHNSKHDPTLLPASIGKRLRFR 1352
Query: 224 XSFLPYRLSP 253
S PY ++P
Sbjct: 1353 HSEAPYVIAP 1362
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 111 bits (268), Expect = 1e-23
Identities = 49/82 (59%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANA-NVRPXW 437
ILG LF SLC Y RHP+ +PF P LF ECI +N+Y+QLS+KT+A I ANA P W
Sbjct: 1329 ILGEHLFQSLCSVYNRHPSESIPFDPVLFAECICINDYAQLSSKTKATIVANAERSDPDW 1388
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
YT+V+IF+K+QHK+N+GSIFG
Sbjct: 1389 RYTSVKIFAKSQHKVNDGSIFG 1410
Score = 73.3 bits (172), Expect = 5e-12
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +2
Query: 509 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHL 673
KACQTLALMHD ++L GP+KKYQR FD KD P +++ + G+TP DLS + ++L
Sbjct: 1413 KACQTLALMHDYVILTLGPVKKYQRFFDQKDCPAHIYKHCGKTPADLSIWCKTNL 1467
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DPD E+ ++ + S+QFP++D P+ Q S+IA H D TLL S+ KRLRFR S
Sbjct: 1258 DPDLKEMLYRDDASSQFPYLDSPFLLSCQPSSLIAAIHKPATDSTLLPLSVNKRLRFRPS 1317
Query: 230 FLPYRLSP 253
PY +P
Sbjct: 1318 TSPYCFTP 1325
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 110 bits (265), Expect = 3e-23
Identities = 52/82 (63%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANA-NVRPXW 437
+LG L+ SLCRAY R P PF LFVECI+LNE++QL++KTQAVI NA P W
Sbjct: 1407 LLGQLLYESLCRAYHRSPTTTHPFDEALFVECIDLNEFAQLTSKTQAVIMGNARRSDPDW 1466
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
++AVRIFSKTQHK+NEGSIFG
Sbjct: 1467 RWSAVRIFSKTQHKVNEGSIFG 1488
Score = 90.2 bits (214), Expect = 4e-17
Identities = 37/61 (60%), Positives = 49/61 (80%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
F KACQTLALMHDA+VL+ GP+KKYQRVFD++DRP +L+++ GQTP +S + +HL
Sbjct: 1487 FGAWKACQTLALMHDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLT 1546
Query: 677 P 679
P
Sbjct: 1547 P 1547
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/68 (58%), Positives = 49/68 (72%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DP EI + + SNQFP VD Y AQ ++++AP HDSK+DPTLL+ASI KRLRFR S
Sbjct: 1336 DPTDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPS 1395
Query: 230 FLPYRLSP 253
PYR+SP
Sbjct: 1396 ASPYRISP 1403
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 108 bits (260), Expect = 1e-22
Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = +3
Query: 258 RILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANAN-VRPX 434
+ILG L+ S CRAY RHP VPF LF ECIN+NE++Q SNKT++ I ANA+ P
Sbjct: 1362 QILGLTLYHSWCRAYNRHPQAVVPFDELLFAECININEFAQSSNKTKSTIIANASRSDPD 1421
Query: 435 WXYTAVRIFSKTQHKINEGSIFG 503
W TAV+IFSKTQHKINE SIFG
Sbjct: 1422 WRITAVKIFSKTQHKINEASIFG 1444
Score = 79.4 bits (187), Expect = 8e-14
Identities = 32/60 (53%), Positives = 45/60 (75%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
F KACQTLALMHD +VL GP+K YQR+FDS++RP N++ + G +P ++S +A HL+
Sbjct: 1443 FGSWKACQTLALMHDYVVLFLGPVKIYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLQ 1502
Score = 70.5 bits (165), Expect = 4e-11
Identities = 38/68 (55%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFP-WVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRX 226
DP+ EI H+GEFS QFP ++ + AQ+ ++IA KHDSK DPTLL ASI KRL FR
Sbjct: 1291 DPEIKEILHRGEFSAQFPILLNQDFSLSAQSSTLIAAKHDSKRDPTLLVASITKRLCFRP 1350
Query: 227 SFLPYRLS 250
S Y+LS
Sbjct: 1351 SDSSYQLS 1358
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 108 bits (259), Expect = 1e-22
Identities = 49/82 (59%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANAN-VRPXW 437
ILG L+++ C+A+ R PN +PF P LF ECI LNEY+QLS+KTQA I +NA+ P W
Sbjct: 1356 ILGHLLYTNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIVSNASRSDPDW 1415
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
YT VRIF+K+QHK+N+GSIFG
Sbjct: 1416 RYTVVRIFAKSQHKVNDGSIFG 1437
Score = 73.3 bits (172), Expect = 5e-12
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
F KACQTLALMHD ++L GP+KKYQR+ D DRP ++ + G+TP +LS ++ S LK
Sbjct: 1436 FGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTPSELSAWSHSFLK 1495
Score = 65.3 bits (152), Expect = 1e-09
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DPD E+ + S QFP++D PY Q S++A H DPTLL SI+KRLRFR S
Sbjct: 1285 DPDLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRAS 1344
Query: 230 FLPYRLSP 253
PY +P
Sbjct: 1345 SSPYAFTP 1352
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 105 bits (252), Expect = 1e-21
Identities = 50/82 (60%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +3
Query: 258 RILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQAN-ANVRPX 434
++LG LFSSLC AY R+PN +PFQP LF ECI +N+Y+QLS+KTQA I AN P
Sbjct: 1425 QLLGQHLFSSLCLAYGRNPNSVLPFQPELFSECICINDYAQLSSKTQATIVANHQRSDPD 1484
Query: 435 WXYTAVRIFSKTQHKINEGSIF 500
W TAVRIF+K QHK+N+ SIF
Sbjct: 1485 WRLTAVRIFAKAQHKVNDASIF 1506
Score = 85.0 bits (201), Expect = 2e-15
Identities = 35/59 (59%), Positives = 47/59 (79%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHL 673
F KACQTLALMH I+L+ GP+KKYQR+FDSKDRPP+++ + G+TP LS++ +HL
Sbjct: 1506 FSGWKACQTLALMHGYIILVLGPVKKYQRIFDSKDRPPHIYYHCGKTPSQLSQWCQTHL 1564
Score = 69.7 bits (163), Expect = 6e-11
Identities = 33/68 (48%), Positives = 42/68 (61%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DPD E+ + SNQFP++D P+ Q S++AP H DPTLL SI KRLRFR S
Sbjct: 1355 DPDLKEVLINDQKSNQFPYLDAPFELSCQPSSLLAPIHKPASDPTLLPGSIKKRLRFRAS 1414
Query: 230 FLPYRLSP 253
PY ++P
Sbjct: 1415 SSPYSITP 1422
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 105 bits (251), Expect = 1e-21
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Frame = +3
Query: 180 RLYFRPPLPKDSVSXPPSFLTDFLL*RILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECI 359
RL FRP ++ SFL G L+ S C+ Y+R PN ++PF LF+ECI
Sbjct: 1315 RLRFRPTAAPYQITPSDSFL---------GNCLYRSWCQVYRRDPNVRLPFNEALFLECI 1365
Query: 360 NLNEYSQLSNKTQAVIQANAN-VRPXWXYTAVRIFSKTQHKINEGSIFGP*K 512
+N+Y+QLS+KTQA I ANA+ P W +T V+IF+K+QHK+N+GSIFGP K
Sbjct: 1366 AVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAKSQHKVNDGSIFGPWK 1417
Score = 85.0 bits (201), Expect = 2e-15
Identities = 34/60 (56%), Positives = 46/60 (76%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
F P KACQTLALMHD ++L GP+KKYQR+FD +RP +++ + G TP+DL R+ S HL+
Sbjct: 1413 FGPWKACQTLALMHDYVILTLGPVKKYQRLFDQLERPSHIYYHAGNTPHDLRRWCSKHLE 1472
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +2
Query: 50 DPDSLEIRHKGEFSNQFPWVDLPYXXXAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRXS 229
DP+ EI K + S QFPW++L + QT S+I+ +H D TLL AS+ KRLRFR +
Sbjct: 1262 DPEVKEIELKDQTSQQFPWLNLDFHISCQTSSLISARHQPGSDSTLLPASLHKRLRFRPT 1321
Query: 230 FLPYRLSP 253
PY+++P
Sbjct: 1322 AAPYQITP 1329
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 99.5 bits (237), Expect = 7e-20
Identities = 47/82 (57%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANAN-VRPXW 437
ILG+ LF + C A R P+ VPF LF ECI LNE++QLS+KTQA+I AN + P W
Sbjct: 1439 ILGSLLFDAHCTAMLRSPSASVPFDENLFAECIALNEFAQLSSKTQAIIMANRDRSDPDW 1498
Query: 438 XYTAVRIFSKTQHKINEGSIFG 503
++AVRIF+KTQHK+N+ SIFG
Sbjct: 1499 RWSAVRIFAKTQHKVNDHSIFG 1520
Score = 93.5 bits (222), Expect = 4e-18
Identities = 65/174 (37%), Positives = 86/174 (49%), Gaps = 8/174 (4%)
Frame = +2
Query: 182 TLLSASIAKRLRFRXSFLPYRLSPLTNPWHISVFIXXXXXXXXXXXXXXXXARXFR*MYQ 361
T L ASI KRLRFR S PYR +T+ I + ++
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYR---ITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFA 1468
Query: 362 SQ*VLTAFQQDSSCHPS----ERKCSSRXXVHCCPHIFKNSA*NQRRLN----FRPLKAC 517
L F Q SS + R S IF + Q ++N F KAC
Sbjct: 1469 ECIALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAKT---QHKVNDHSIFGGWKAC 1525
Query: 518 QTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKP 679
QTLALMHDA+VL+ GP+KKYQR+FD+ DRP N+FVY G TP +++ + ++LKP
Sbjct: 1526 QTLALMHDAVVLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANWCRANLKP 1579
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 79.4 bits (187), Expect = 8e-14
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
F KACQTLAL HDA++L+ GP+KKYQR FD+K RP ++ + TP++LS + +H+K
Sbjct: 10 FSDWKACQTLALAHDAVILLLGPVKKYQRCFDNKARPSKIYYHASHTPFELSTWCQAHMK 69
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 41.1 bits (92), Expect = 0.025
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 506 LKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSH 670
+KA QT+A V+++G + +Y R +P N+F+ +TP D+ R+A H
Sbjct: 1280 IKAGQTIASFQQEAVMLYGTMARYMRRVREVFQPANIFINCERTPEDMDRWAREH 1334
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 40.3 bits (90), Expect = 0.044
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 488 RLNFRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS 667
+L +K QT+A A V+++G + +Y R + P N+ + +TP DLSR+ +
Sbjct: 1075 KLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRN 1134
Query: 668 H 670
H
Sbjct: 1135 H 1135
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 39.5 bits (88), Expect = 0.076
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = +3
Query: 240 TDFLL*RILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLNEYSQLSNKTQAVIQANA 419
T+F L + +G LF + RA K P + +PF L+ C N + + LS +++ A
Sbjct: 957 TEFALKKDIGDLLFINYHRAMKL-PKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVA 1015
Query: 420 NVRPXWXYTAVRIFSKTQ 473
P + +++F K+Q
Sbjct: 1016 RQDPDFPINEIKLFLKSQ 1033
Score = 36.3 bits (80), Expect = 0.71
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 506 LKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSH 670
+K QT+A A V+++G + +Y R +P N+F+ +TP DL +A ++
Sbjct: 1045 VKPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCEKTPADLDEWAKAN 1099
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSH 670
FR KA QTLA A++ F P +Y + P NL+++ G+ DL+ + ++H
Sbjct: 1902 FRSAKAGQTLACFQHAVLCRFAPYMRYIEAKVFEVLPKNLYIHSGKNIDDLAEWVTAH 1959
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 39.1 bits (87), Expect = 0.10
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +2
Query: 503 PLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPL 682
P+K QT+A V+++G + +Y R + +P ++F+ +TP D ++F H
Sbjct: 1105 PVKPGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSYK 1164
Query: 683 QIS 691
Q++
Sbjct: 1165 QVA 1167
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 488 RLNFRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFA 661
+L +K QT+A + V++FG + +Y R F +P +F+ TP D+S +A
Sbjct: 1171 KLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWA 1228
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 488 RLNFRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS 667
+L + +K QT+A V+++G + +Y R F P N+ + +TP DLSR+ +
Sbjct: 1099 KLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN 1158
Query: 668 H 670
+
Sbjct: 1159 Y 1159
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 37.5 bits (83), Expect = 0.31
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 506 LKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFAS 664
+K QT+A H A V++FG + +Y R +P ++ + TP DLS +A+
Sbjct: 1262 IKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRINCEMTPEDLSSWAA 1314
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 37.1 bits (82), Expect = 0.41
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 488 RLNFRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS 667
+L +K QT+A V+++G + +Y R + +P N+F+ TP DL +F S
Sbjct: 1307 KLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRRFQPDNIFINCETTPEDLDKFIKS 1366
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 36.3 bits (80), Expect = 0.71
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 506 LKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRF 658
+KA QT+A V+I+G + +Y R F ++ P +FV TP D + F
Sbjct: 1012 IKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKIFVNCETTPADFNSF 1062
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 33.5 bits (73), Expect = 5.0
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSH 670
FR KA Q++ A++ F P +Y + ++ PPN +++ G++ +L + +
Sbjct: 1713 FRNAKAAQSIVCFQHAVLCRFAPYMRYIEMKLNEVLPPNFYIHSGKSLEELDAWVKRY 1770
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 33.5 bits (73), Expect = 5.0
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 497 FRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRF 658
FR KA QT+ H ++ F P +Y + ++ P N +++ G++ +L+ +
Sbjct: 1810 FRDAKAAQTIVCFHHIVLARFAPFIRYIEMKVNEALPKNYYIHSGKSLDELNNW 1863
>UniRef50_Q96TV0 Cluster: Mig1 protein; n=1; Debaryomyces
occidentalis|Rep: Mig1 protein - Debaryomyces
occidentalis (Yeast) (Schwanniomyces occidentalis)
Length = 458
Score = 33.5 bits (73), Expect = 5.0
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +3
Query: 12 DYKTVAALMRNPGTPTPLKSATRGSSPINFHGSISLXXXAPKPSAL*HPNMTRNMTRLYF 191
DY P +PTP KS T +SPI S + P SA N + N+T L+
Sbjct: 309 DYVKQRLKRSRPNSPTPTKSFTLPNSPILGLSSTN----TPIISA---NNSSTNLTSLFM 361
Query: 192 RPPLPKDSVSXPPSF 236
P + S PPS+
Sbjct: 362 TPAIRSTSYEQPPSY 376
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 33.1 bits (72), Expect = 6.6
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 488 RLNFRPLKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS 667
+L +K QT+A H V+++G + +Y R + P ++ + +TP +S F +
Sbjct: 1208 KLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKA 1267
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 33.1 bits (72), Expect = 6.6
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 506 LKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRF 658
+K QT+A V+++G + +Y R + +P +F+ + P D+++F
Sbjct: 1232 VKPGQTIASFMQETVMVYGTMSRYMRRIRQQHQPAEIFINCEKNPEDMTQF 1282
>UniRef50_UPI0000F308E9 Cluster: UPI0000F308E9 related cluster; n=1;
Bos taurus|Rep: UPI0000F308E9 UniRef100 entry - Bos
Taurus
Length = 448
Score = 32.7 bits (71), Expect = 8.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 46 PGPRLP*NPPQGGVLQSISMGRSPLXXXRPNP 141
PGPR+ +PP+ GV S + R P RPNP
Sbjct: 199 PGPRVQPSPPRPGVQPSPTGPRPPCRSLRPNP 230
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 32.7 bits (71), Expect = 8.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 506 LKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 676
+KA QT+A + + V+IFG + +Y R K P N+ + S++ +H K
Sbjct: 1077 VKAGQTIAAFYQSTVMIFGTMARYMRRVREKFCPKNILINCEIDQPTASKWVDTHWK 1133
>UniRef50_Q98EC2 Cluster: Mll4310 protein; n=20;
Alphaproteobacteria|Rep: Mll4310 protein - Rhizobium
loti (Mesorhizobium loti)
Length = 405
Score = 32.7 bits (71), Expect = 8.8
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 277 CFHLY-VEPINDIPIIKFLFSPXFSLNVSISMSTHSFPTRLKLSSKRTQMFVPXGGTLLS 453
CF + V I D I+ LFS F+ V + ++++ P L Q+F+P G +L
Sbjct: 150 CFDEFSVTDIADAMILSRLFSALFANGVVLIATSNAAPQNLYRDGLNRQLFLPFIG-ILE 208
Query: 454 AYFQKLSIKSTK 489
+ Q LS+ S K
Sbjct: 209 RHAQVLSLDSDK 220
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,918,906
Number of Sequences: 1657284
Number of extensions: 15402820
Number of successful extensions: 38184
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 36707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38145
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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