Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021360
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    30   0.28 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   1.9  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   4.5  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   7.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   7.9  

>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 301 INDIPIIKFLFSPXFSLNVSISMSTHSFPTRLKL 402
           IND+ ++K L  P F+LNV     T S  + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 265 LAHFCFHLYVEPINDIPIIKFLFSPXFSLNVSISMSTHSFPTRLKLSSKR 414
           L  F +   +E +  +  I FL+ P    N  +++ +HS  + LKL+  R
Sbjct: 783 LTLFAYKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLLKLNMDR 832


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 42  NPGTPTPLKSATRGSSPINF 101
           +PGTPT LKS +   SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 234 RKEXRKRSLLAMEAESKVGSYFESCLGAI 148
           RKE  +RS LA+    ++ SY  +  GA+
Sbjct: 288 RKELLRRSCLALTKNKRIDSYERALYGAL 316


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 156 PNMTRNMTRLYFRPPLPKDSVSXPPSFL 239
           PN +      Y+  PL  +SVS PPS L
Sbjct: 30  PNASLPPQTAYYASPLHANSVSLPPSHL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,841
Number of Sequences: 5004
Number of extensions: 64670
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)