Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021360
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0216 - 26453029-26454597                                         30   2.0  
09_02_0411 + 8721855-8722232                                           29   2.6  
07_03_0138 - 14140653-14140988                                         28   6.1  
06_03_0950 - 26266755-26266917,26267273-26267652,26267742-262679...    28   6.1  
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838...    28   6.1  
06_02_0247 - 13465763-13466227                                         28   8.1  
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186...    28   8.1  

>05_06_0216 - 26453029-26454597
          Length = 522

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -2

Query: 295 RHRDENRNVPRIRQRRKSVRKEGGSETESF--GNGGRK*SRVIFRV---MFGCYNAEGLG 131
           RH   N  +P IR+  +   +      ESF   + GR   R + R+    FG +N  G+ 
Sbjct: 91  RHAIPNSLMPAIRRHERRAARALVRSVESFIDADDGRPSRRKVSRLRLEFFGTHNTAGIN 150

Query: 130 AXXIREIDPW 101
               + ID W
Sbjct: 151 RLISKAIDDW 160


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 259 RQRRKSVRKEGGSETESFGNGGRK 188
           R R+K  R++GG   ES G GGR+
Sbjct: 73  RPRKKGEREKGGRRRESTGGGGRR 96


>07_03_0138 - 14140653-14140988
          Length = 111

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 206 WQWRPKVKSGHISSHVWVL*R*GFGRXXXKGDRPMEIDWRTPPCGGFQGSRGPG 45
           W+WR       +S+   V  + G G+   +G+R     WR    GG +G  G G
Sbjct: 21  WRWRWMAAVERVSAAAVV--QAGVGKVGREGERQRGRQWRGRGSGGEEGVEGGG 72


>06_03_0950 -
           26266755-26266917,26267273-26267652,26267742-26267972,
           26268247-26268419,26268549-26268693
          Length = 363

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = -3

Query: 396 ESCWKAV-------STH*D*YIQRKXRAEKELYDWDVVYRLDIEMKTEMCQGFVKGESL* 238
           ESCW  +       S H D Y+  K  +EKEL  ++       E+ T  C G V G+++ 
Sbjct: 165 ESCWTPLDVDYPLRSAHFDKYVLSKMMSEKELLGYNDGEGRAFEVVTLPC-GLVAGDTVL 223

Query: 237 GR 232
           GR
Sbjct: 224 GR 225


>02_05_1304 +
           35581172-35581345,35582504-35582748,35583148-35583829,
           35583908-35584262,35584558-35584649,35584889-35585083,
           35585167-35585840,35586134-35586224
          Length = 835

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 629 LHTQTSWEDDLYCRKLADIS*SGQKLRQWH 540
           L+ +TSWE + +C+ L   + + ++ + WH
Sbjct: 164 LYAETSWEKESWCKALRLAATADKEKKNWH 193


>06_02_0247 - 13465763-13466227
          Length = 154

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 295 RHRDENRNVPRIRQRRKSVRKEGGSETESFGNGG 194
           R R + R   R R+  +  R+ GG E   FG GG
Sbjct: 2   RSRRQRRRSWRWRREDRRCRRGGGGEVAGFGGGG 35


>03_02_0874 +
           12017069-12018051,12018137-12018316,12018421-12018600,
           12018718-12018797,12018999-12019259,12019360-12019474,
           12019631-12019855,12020840-12020849
          Length = 677

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 93  INFHGSISLXXXAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSXP--PSFLTDFLL*R 260
           I  HG   +   A  P AL H  M +    L   PP P  S S P  P+  + FLL R
Sbjct: 31  IQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLLSR 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,349,508
Number of Sequences: 37544
Number of extensions: 454240
Number of successful extensions: 1170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)