Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021360
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  

>SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 346 SLNVSISMSTHSFPTRLKLSSKRTQMFVPXGGTLLSAYFQKLSIKSTK 489
           +L  SI+ S  SFPT L LS K  +   P G +  +    K S+K  K
Sbjct: 33  ALQASIATSKASFPTPLSLSQKNAKAVKPSGNSTSTQTELKSSMKIRK 80


>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 530 LMHDAIVLIFGPIKKYQRVFDSKDR 604
           L  DAI  +   IKKYQR F+ KDR
Sbjct: 490 LDEDAIKKLKKDIKKYQRTFEIKDR 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,857,420
Number of Sequences: 59808
Number of extensions: 494293
Number of successful extensions: 1060
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)