Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021360
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   8.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 190 K*SRVIFRVMFGCYN 146
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 190 K*SRVIFRVMFGCYN 146
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 190 K*SRVIFRVMFGCYN 146
           K SR++F V F C+N
Sbjct: 344 KYSRIVFPVCFVCFN 358


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 303 YRLDIEMKTEMCQGFVKGES 244
           YR +++     C+G  KG++
Sbjct: 104 YRAEVQKAISECKGIAKGDN 123


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 261 ILGTFLFSSLCRAYKRHPNHKVPFQPXLFVECINLN 368
           +L   ++++L R +++      PF+  L+  C NLN
Sbjct: 421 LLNPIIYATLNRDFRK------PFREILYFRCSNLN 450


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 625 WRPNSIRSLSVCFVPSETI 681
           W P     + + +VPSE I
Sbjct: 97  WNPEEYGGVEMLYVPSENI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,499
Number of Sequences: 438
Number of extensions: 4963
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)