Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021360
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 31 0.73
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con... 31 0.96
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 29 2.9
At4g27010.1 68417.m03885 expressed protein ; expression support... 28 6.8
At2g44230.1 68415.m05504 expressed protein 28 6.8
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 27 8.9
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 27 8.9
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 27 8.9
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 27 8.9
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 622 VWRPNSIRSLSVCFVPSETITN 687
VW P SIR+ S+ + PSET+ N
Sbjct: 107 VWTPESIRTKSLTYYPSETLQN 128
>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
contains Pfam profile PF05602: Cleft lip and palate
transmembrane protein 1 (CLPTM1)
Length = 590
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 622 VWRPNSIRSLSVCFVPSETITN 687
VW+P S R+LS+ + PSE + N
Sbjct: 105 VWKPESTRTLSMTYYPSEALKN 126
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 39 RNPGTPTPLKSATRGS-SPINFHGSISLXXXAPKPSAL*HPNMTRNMTRLYFRPPLPKDS 215
++P PTP KS + S +P H + P +L P ++ + PP PK S
Sbjct: 97 KSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTPKKS 156
Query: 216 VSXPPS 233
PPS
Sbjct: 157 PPPPPS 162
>At4g27010.1 68417.m03885 expressed protein ; expression supported by
MPSS
Length = 2535
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 280 FHLYVEPINDIPIIKFLF 333
F+LY +PIN++P+ F F
Sbjct: 1927 FYLYDDPINEVPVFSFNF 1944
>At2g44230.1 68415.m05504 expressed protein
Length = 542
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 32 SNEEPRDPDSLEIRHKGEFSNQFPWVDLPYXXXAQ 136
SN P +P+ L + +GEF++ W+DLP A+
Sbjct: 279 SNPVPVEPNGLNLP-QGEFNDGLYWLDLPVASDAR 312
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 46 PGPRLP*NPPQGGVLQSISMGRSPLXXXRPNPQRYS 153
PG LP PP GG + G P RP PQ++S
Sbjct: 162 PGQMLP-PPPFGGQGPPMGRGPPPPYGMRPPPQQFS 196
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 46 PGPRLP*NPPQGGVLQSISMGRSPLXXXRPNPQRYS 153
PG LP PP GG + G P RP PQ++S
Sbjct: 162 PGQMLP-PPPFGGQGPPMGRGPPPPYGMRPPPQQFS 196
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 178 PDFTFGLHCQKTPFPXLLPSLQTFS 252
PD T L +TPFP +P +++FS
Sbjct: 848 PDVTQNLPVSRTPFPARVPVVKSFS 872
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 355 VSISMSTHSFPTRLKLSSKRTQMFVPXGGTLLSAYFQKLSIKST-KAQFSALESM 516
++I+M+ SFP+ L ++ + +F P T L A L IKS+ K +F SM
Sbjct: 1 MAIAMAVVSFPSLLNKTTLSSSLFTP---TFLPAKSSSLLIKSSPKTRFVVSSSM 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,206
Number of Sequences: 28952
Number of extensions: 355874
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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