Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021358
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    71   7e-15
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.4  
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      21   9.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 71.3 bits (167), Expect = 7e-15
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
 Frame = +1

Query: 97  VPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*-CINING 273
           V QKF ++ K  K ++L+ +++   NER   +IF       DF++    EQ     +I+G
Sbjct: 384 VEQKFFQVSKFDKRSKLVSILEKAPNER--TLIFVETKRNADFLATFLSEQNIQSTSIHG 441

Query: 274 QMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAG 453
                 +      F++G   V+  T + +RGLD     HVINYD P    +Y+HR GR G
Sbjct: 442 DRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTG 501

Query: 454 RLGS 465
           R+G+
Sbjct: 502 RVGN 505


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 431 STGAGARAGWDPRPDPTSPASWPGPAGRAG 520
           + G G R  + P P P++P   PG  G  G
Sbjct: 195 AAGYGLR-NYGPEPVPSTPYPPPGSLGSMG 223



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 678 PPVDTTAAGNTGSSTCLSKSPAH 610
           PP  TT++G+  S    + +P H
Sbjct: 34  PPPATTSSGSPASVASNASAPLH 56


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 612 HPDNPSRMTRLMLALTWGRS 553
           HP+ P R  +L+L L   RS
Sbjct: 354 HPNEPGRFAKLLLRLPALRS 373


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 372 VQSSGNDISTRNDINFP 322
           V SSG D+ST N I  P
Sbjct: 56  VGSSGVDVSTVNSITDP 72


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 638  EEPVLPAAVVSTGG 679
            +EPVLPA VV   G
Sbjct: 2226 QEPVLPAEVVPCQG 2239


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 651 NTGSSTCLSKSPAHPDNPSRMTRLML 574
           N   + C  K P H D+P +    ML
Sbjct: 134 NLSLNKCFVKVPRHYDDPGKGNYWML 159


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 633 CLSKSPAHPD 604
           CLS  P HPD
Sbjct: 131 CLSGGPKHPD 140


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 181 RPVMIFSNQTSGCDFVSIPEREQ 249
           RP  +F  Q++ CD+    +RE+
Sbjct: 505 RPGTVFHTQSNICDWPEHADREK 527


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 672 VDTTAAGNTGSSTCLSKSPAHPDNPSRM 589
           +D  AAG  G    +      PD+PS M
Sbjct: 89  MDIRAAGYYGPQQQMDGQEYRPDSPSSM 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,650
Number of Sequences: 336
Number of extensions: 3471
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)