Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021358
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 71 2e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 69 8e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 68 1e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 67 2e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 65 1e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 62 6e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 62 7e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 62 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 61 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 60 3e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 58 9e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 58 1e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 57 2e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 4e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 56 5e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 5e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 55 8e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 8e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 51 1e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 50 3e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 49 7e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 4e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 45 1e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.002
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.002
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 37 0.003
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 36 0.004
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 34 0.022
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 31 0.16
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 1.9
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 27 1.9
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.6
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 4.5
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 26 4.5
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 26 5.9
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 7.8
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.8
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CI-NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
+IF N D+++ RE + +++G+MP + + + FR G V+ CTDI +RG
Sbjct: 264 VIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARG 323
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+D + VINYD P + +YIHR GR+GR G
Sbjct: 324 IDVQQVSLVINYDLPANRENYIHRIGRSGRFG 355
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 68.5 bits (160), Expect = 8e-13
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Frame = +1
Query: 37 VAAESLKMVRTSNIHRILPHVPQ--KFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQT 210
V SL + + NI +I+ V K RLGK + E+LK D++ + V+IF+
Sbjct: 328 VTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIE--EVLK----DRDNK--VLIFTGTK 379
Query: 211 SGCDFVSIPEREQR*-CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTH 387
D ++ R+ + I+G + FR+GK ++ TD+ SRG+D
Sbjct: 380 RVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGIT 439
Query: 388 HVINYDFPLHTSDYIHRCGRAGRLGSPPGSHVTSFVA 498
HV NYDFP +T DY+HR GR GR G+ G+ T F +
Sbjct: 440 HVFNYDFPGNTEDYVHRIGRTGRAGA-KGTAYTYFTS 475
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 68.1 bits (159), Expect = 1e-12
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Frame = +1
Query: 61 VRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFV-SIP 237
V T NI + + Q ++ + + A L+ L+ +N ++ +IF N+T + + SI
Sbjct: 220 VETDNIS-VPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSIL 278
Query: 238 EREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLH 417
+ ++ +M + ++ FR+ ++ TD+ SRGLD VIN+D P
Sbjct: 279 RLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRD 338
Query: 418 TSDYIHRCGRAGRLG 462
DYIHR GR R G
Sbjct: 339 PDDYIHRVGRTARAG 353
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/68 (42%), Positives = 41/68 (60%)
Frame = +1
Query: 262 NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRC 441
+I+G + + E+FRSG+ +++ T + SRGLD HVINYD P DY+HR
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518
Query: 442 GRAGRLGS 465
GR GR G+
Sbjct: 519 GRTGRAGN 526
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 64.9 bits (151), Expect = 1e-11
Identities = 32/78 (41%), Positives = 44/78 (56%)
Frame = +1
Query: 259 ININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHR 438
+ I+G M +L F+SGK V+ TD+ +RGLD + VIN FPL DY+HR
Sbjct: 444 VGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHR 503
Query: 439 CGRAGRLGSPPGSHVTSF 492
GR GR + G+ +T F
Sbjct: 504 IGRTGR-ANTKGTAITFF 520
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 62.5 bits (145), Expect = 6e-11
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I+G++P + FR G++ V+ TD+++RG+D VIN+DFP YIHR G
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 445 RAGRLGSPPGSHVTSF 492
R GR G+ G VT F
Sbjct: 378 RTGRAGN-TGQAVTFF 392
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 62.1 bits (144), Expect = 7e-11
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = +1
Query: 103 QKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*-CININGQM 279
Q++L HK L+ LV ++ ++IF+ + ++I R I ++GQ+
Sbjct: 262 QRYLFFPFKHKDTYLVYLV--NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQL 319
Query: 280 PVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRL 459
+LG F+SG + + TD+ +RGLD VINYD P + YIHR GR R
Sbjct: 320 SQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA 379
Query: 460 G 462
G
Sbjct: 380 G 380
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 61.7 bits (143), Expect = 1e-10
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +1
Query: 103 QKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*-CININGQM 279
Q +++L + K ++ L+ D E V+IF S + + RE I I+G +
Sbjct: 272 QHYVKLEEKAKNRKINDLL--DSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGL 329
Query: 280 PVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRL 459
P + ++ +++ F+ + TD+ RG+D R + VINYD P Y+HR GRAGR
Sbjct: 330 PQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRF 389
Query: 460 GS 465
G+
Sbjct: 390 GT 391
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/66 (40%), Positives = 38/66 (57%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I G + + +L + FR GK N++ TD+ SRG+D +VINYDFP ++HR G
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 445 RAGRLG 462
R R G
Sbjct: 436 RTARAG 441
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 60.1 bits (139), Expect = 3e-10
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F +G +N++ C+D+++RG+D T +VINYD PL Y+HR GR R G
Sbjct: 483 FATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAG 532
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 58.4 bits (135), Expect = 9e-10
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CIN-INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
+IF N D+++ E+ ++ ++G M + FR+G ++ TD+++RG
Sbjct: 262 VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARG 321
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+D + VINYD P + +YIHR GR GR G
Sbjct: 322 IDVQQVSLVINYDLPANRENYIHRIGRGGRFG 353
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 58.0 bits (134), Expect = 1e-09
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 304 FEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F FR+G + C+D+++RG+D + VIN+DFP + Y+HR GR+GR G
Sbjct: 324 FHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 376
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+++G +V+ T +V+RGLD V+NYD P H DY+HR GR GR G
Sbjct: 714 YKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAG 763
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGK---VNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
++G + Q++ +F S + +++ CTD+ +RGLD V+ YD P T DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 436 RCGRAGRLG 462
R GR R G
Sbjct: 533 RIGRTARAG 541
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.0 bits (129), Expect = 5e-09
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I+G + + ++ E FR GK N + TD+ SRG+D VINY+ P Y+HR G
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 445 RAGRLG 462
R R G
Sbjct: 594 RTARAG 599
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.0 bits (129), Expect = 5e-09
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 259 ININGQMPVQLKLGKFEMFR-SGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
+ ++GQ + FE F+ S K V+ TDI SRGLD V+ D PL + H
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
Query: 436 RCGRAGRLG 462
RCGRAGR G
Sbjct: 346 RCGRAGRAG 354
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 55.2 bits (127), Expect = 8e-09
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSD-YIHRC 441
++ Q+ + +L E F++ V+ CTD+ +RG+D HVI+Y P HT+D Y+HR
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVP-HTADMYVHRS 477
Query: 442 GRAGR 456
GR R
Sbjct: 478 GRTAR 482
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.0 bits (119), Expect = 8e-08
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +1
Query: 148 LKLVQ--ADQNERRPVMIFSNQTSGCDFVS--IPEREQR*CININGQMPVQLKLGKFEMF 315
L L+Q N +++F S DFV + + C ++ + + E F
Sbjct: 280 LSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESF 339
Query: 316 RSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
R + ++ TD+V+RG+D V+ P +T DYIHR GR GR G
Sbjct: 340 RKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAG 388
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 51.2 bits (117), Expect = 1e-07
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 3/161 (1%)
Frame = +1
Query: 13 LPETVNNFVAAESLK--MVRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRP 186
LP V N + ++ M+ NI + + V Q+ + K ++ + P
Sbjct: 459 LPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPP 518
Query: 187 VMIFSNQTSGCDFVSIPEREQR*-CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSR 363
++IF N + ++ + ++G + + E R+ +++ TDI R
Sbjct: 519 IIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGR 578
Query: 364 GLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPGSHVT 486
G+D V+NY+ DY HR GR GR G G+ +T
Sbjct: 579 GIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGK-SGTAIT 618
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +1
Query: 259 ININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHR 438
++++G+ Q + F F + + ++ CT++ +RGLD ++ YD P DYIHR
Sbjct: 364 LDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHR 423
Query: 439 CGRAGR 456
GR R
Sbjct: 424 VGRTAR 429
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.8 bits (111), Expect = 7e-07
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTS------DYIHRCGRAGRLG 462
+ FR G V+ T++++RG+D ++ + V+NYD PL + Y+HR GR GR G
Sbjct: 396 DSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG 453
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/66 (36%), Positives = 33/66 (50%)
Frame = +1
Query: 259 ININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHR 438
++++G+ + F S + V+ CTDIV+RGLD VI D P YIHR
Sbjct: 313 LHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHR 372
Query: 439 CGRAGR 456
GR R
Sbjct: 373 VGRTAR 378
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 355 VSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSP 468
V+RGLD V+N+D P +T YIHR GR R G P
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKP 423
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 304 FEMFRS--GKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F+ FR+ GK ++ T G++ V++Y P + DY+ GRAGR G
Sbjct: 1462 FDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1516
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 304 FEMFRS--GKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F+ FR+ GK ++ T G++ V++Y P + DY+ GRAGR G
Sbjct: 1462 FDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1516
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSP 468
++SG +I T G+D VI++ FP Y GRAGR G P
Sbjct: 789 WQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKP 840
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
+ FR+G +N + T I GLD T +I YD I R GR GR
Sbjct: 525 DQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
F++GK NV+ T + G+D + VI ++ + Y+ GRA + S
Sbjct: 419 FKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMAS 469
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
EMF +GK+ I T+ + G+D VI FP S+ + GRAGR
Sbjct: 605 EMF-NGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 663 TAAGNTGSSTCLSKSPAH 610
TA G TGSSTC K+P +
Sbjct: 606 TAEGITGSSTCFKKAPRY 623
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -2
Query: 303 LPQLQLYRHLAVDVDASTLFSFRNRHEVAARRLIAEDHHRSPLVLIRLDKFEEF 142
L + Q YRH D+ LF F + V + DHH + ++ ++ + E +
Sbjct: 208 LSRSQDYRHHKEDIAVGALFGFAIAYVVYRQLFPPLDHHNADILYVQAELDEGY 261
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 491 KLVTWDPGGDPSRPARPHRW 432
+ + WDP DP R H W
Sbjct: 298 RFIEWDPSSDPRDYRRKHNW 317
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 22 TVNNFVAAESLKMVRTSNI-HRILPHVPQKFLRLGKAHKPAE-LLKLVQA 165
T N + E +V + + HR+LP + + L K H P++ LL+ +A
Sbjct: 362 TYNIYYTNEDTSIVLDTQLSHRLLPSLRKPLLNFVKVHPPSQKLLRFCRA 411
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 539 GQANSDLPHVNANIKRVIREGLSG*AGLLLRQVEEPVLPAAVVST 673
G P + K VI L G + +++ ++ E LPA VST
Sbjct: 10 GLCTPSTPESPGSFKGVIDASLEGNSSIMIDEIPESDLPAPQVST 54
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 1 RHEDLPETVNNFVAAESLK-MVRTSNIHRILPHVP 102
+H DLP VNNF S +R IH +L +VP
Sbjct: 306 KHADLPNLVNNFEKYLSFSPHIREPTIHFVL-YVP 339
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 513 ELVQKIETSVRRTLTCPMLTPTSSGSYEKDCQDERGS 623
ELV K E ++ + +L T SY+K QDE S
Sbjct: 362 ELVWKREEALAYAINPSILPTTLLTSYQKSIQDEENS 398
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 464 DPSRPARPHRW 432
DP+ PA PH+W
Sbjct: 73 DPNHPAHPHKW 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,243
Number of Sequences: 5004
Number of extensions: 56857
Number of successful extensions: 199
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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