Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021358
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 73 2e-22
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 87 1e-17
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 64 8e-11
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 61 1e-09
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 60 2e-09
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 60 2e-09
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 58 5e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 54 1e-07
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 53 3e-07
SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11) 52 6e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 49 3e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 46 2e-05
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 46 2e-05
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 45 5e-05
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017) 45 7e-05
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017) 45 7e-05
SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18) 44 9e-05
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 37 0.018
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 36 0.023
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 36 0.023
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19) 34 0.12
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05) 33 0.22
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 33 0.29
SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12) 31 1.2
SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 3.6
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 29 3.6
SB_59278| Best HMM Match : Helicase_C (HMM E-Value=0.00034) 29 4.7
SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) 29 4.7
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 28 6.2
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 6.2
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06) 28 6.2
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0) 28 6.2
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 72.9 bits (171), Expect(2) = 2e-22
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Frame = +1
Query: 271 GQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRA 450
G +++ +FE F++ +++ CTDI SRGLDT+ HVIN+DFP DYIHR GR
Sbjct: 728 GNSGTRIRCERFEKFQNKTADILVCTDIASRGLDTSDVSHVINFDFPNSMVDYIHRVGRT 787
Query: 451 GRLG--SPP-GSHVTSFVA 498
GR+ +P S TSF++
Sbjct: 788 GRVSHVTPQVTSRATSFIS 806
Score = 50.8 bits (116), Expect(2) = 2e-22
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 67 TSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSIP-ER 243
+S +HR+LPHV KF++L + K +++L++ D ++F N S CD+++ E+
Sbjct: 617 SSGLHRVLPHVRHKFIKLNQHEKAERIVELLKKDSKSPGQTIVFCNSASSCDWLARHLEQ 676
Query: 244 EQR*CININGQMP 282
I ++G +P
Sbjct: 677 HNLSLIRLHGNIP 689
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 87.0 bits (206), Expect = 1e-17
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +1
Query: 85 ILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVS-IPEREQR*CI 261
I P V Q + L KP +LL+ ++ PV++F++ D+V+ + ++EQ
Sbjct: 303 IAPSVQQNVVFLYHYQKPQKLLETLRTTPYP--PVIVFTSSIQNVDYVTELLKQEQFHAS 360
Query: 262 NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRC 441
++ + P + + FR GKV+++ TD+ SRGLD HVINYD P YIHRC
Sbjct: 361 GLHSEKPQDYRFKLVKAFRDGKVDILVATDVASRGLDFPEVTHVINYDLPDTIECYIHRC 420
Query: 442 GRAGRLG 462
GR GR+G
Sbjct: 421 GRTGRIG 427
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 64.5 bits (150), Expect = 8e-11
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Frame = +1
Query: 94 HVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSI-PEREQR*CININ 270
++ QK + + + K + LL L+ A ++ ++F G D + + ++ C +I+
Sbjct: 1073 NITQKVVWVDEFDKRSFLLDLLNAS-GPQQLTLVFVETKKGADALEMFLAKDGYYCTSIH 1131
Query: 271 GQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRA 450
G + + FR G ++ T + +RGLD HVIN+D P +Y+HR GR
Sbjct: 1132 GDRSQREREEALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRT 1191
Query: 451 GRLG 462
GR+G
Sbjct: 1192 GRVG 1195
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F++G ++ TD+ SRGLD +VINYDFP H DY+HR GR GR G
Sbjct: 88 FKTGLARILIATDVASRGLDIKDITYVINYDFPRHIEDYVHRVGRTGRAG 137
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 64.5 bits (150), Expect = 8e-11
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +1
Query: 103 QKFLRLGKAH-KPAELLKLVQADQNERRPVMIFSNQTSGCD-FVSIPEREQR*CININGQ 276
Q++L L AH + L+ L++ + ++ + V++F++ C VS+ + C+ ++
Sbjct: 223 QRYL-LTPAHVRDCYLVHLLR-ENDDNQSVIVFTHTCKNCQVLVSMFHKLGLTCVGLHSL 280
Query: 277 MPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
+ +L F+SG + ++ TD+ SRGLD + V+N + P DYIHR GR R
Sbjct: 281 LSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTAR 340
Query: 457 LG 462
G
Sbjct: 341 AG 342
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CI-NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
+IF N D+++ RE + +++G MP + + + FR+G+ V+ TD+ +RG
Sbjct: 240 VIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWARG 299
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
LD + VINYD P + YIHR GR+GR G
Sbjct: 300 LDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 331
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSI-PEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
++F DF++I E +I+G Q + + FR G+ V+ T++ +RG
Sbjct: 966 LVFVESKRSADFLAIFLSGEGFPTTSIHGDRLQQEREEALDDFRKGRCPVLIATNVAARG 1025
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPGSHVTSFV 495
LD HVIN+D P +Y+HR GR GR+G+ G T F+
Sbjct: 1026 LDIDDVKHVINFDLPSDIDEYVHRIGRTGRIGN-KGKATTFFL 1067
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 60.9 bits (141), Expect = 1e-09
Identities = 38/141 (26%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Frame = +1
Query: 55 KMVRTSNIHRILPHVPQKFLRLGKAH-KPAELLKLVQADQNERRPVMIFSNQTSGCDFVS 231
K+ +T N+ R P Q F + ++H K ++L+ ++A ++++ M+F + + ++ S
Sbjct: 50 KLTKTKNVQRT-PSTLQNFYLICRSHEKFSQLVAFLKARKDKKN--MVFFSTCACVNYFS 106
Query: 232 IPEREQR*CINI---NGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINY 402
+ ++I +G+M + F+ FR + ++ CTD+++RG+D + VI Y
Sbjct: 107 KALTKFLPNVHIMALHGKMKSN-RHKIFDSFRKLESGILVCTDVMARGVDIPEVNWVIQY 165
Query: 403 DFPLHTSDYIHRCGRAGRLGS 465
D P + ++HRCGR R+G+
Sbjct: 166 DPPSSANAFVHRCGRTARIGN 186
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +1
Query: 256 CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
C I+ +M + F FR G + C+D+ +RG+D + VIN+DFP ++ Y+H
Sbjct: 318 CFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFPKNSETYLH 377
Query: 436 RCGRAGRLG 462
R GR+GR G
Sbjct: 378 RIGRSGRFG 386
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +1
Query: 256 CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
C I+ +M + F FR G + C+D+ +RG+D + VIN+DFP ++ Y+H
Sbjct: 318 CFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFPKNSETYLH 377
Query: 436 RCGRAGRLG 462
R GR+GR G
Sbjct: 378 RIGRSGRFG 386
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 58.4 bits (135), Expect = 5e-09
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +1
Query: 103 QKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVS-IPEREQR*CININGQM 279
Q +++L K +L L+ D E V+IF C +S + ++ I I+ M
Sbjct: 312 QYYVKLKDNEKNRKLFDLL--DLLEFNQVIIFVKSVQRCTALSHLLLKQNFPAICIHRGM 369
Query: 280 PVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRL 459
+ +L +++ F++ + ++ T++ RG+D R + V NYD P + Y+HR RAGR
Sbjct: 370 KQEERLARYQQFKNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 429
Query: 460 GS 465
G+
Sbjct: 430 GT 431
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 53.6 bits (123), Expect = 1e-07
Identities = 36/122 (29%), Positives = 56/122 (45%)
Frame = +1
Query: 97 VPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CININGQ 276
+P + RL K + +LL+L+ D P++IF NQ ++ R ++G
Sbjct: 272 MPPQVERLAKNYLRKKLLELLNKDLEP--PIIIFVNQ-----------KKFR-ATTLHGG 317
Query: 277 MPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
+ + + G +++ TD+ RG+D HVINYD DY HR GR GR
Sbjct: 318 RNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGR 377
Query: 457 LG 462
G
Sbjct: 378 AG 379
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CIN-INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
+IF+N D+++ E+ ++ ++G M + + + FRSG V+ TD+++RG
Sbjct: 334 VIFANTRRKVDWLAAKMTEKDHTVSSMHGDMSQKERDIIMKEFRSGSSRVLITTDLLARG 393
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRC 441
+D + VINYD P + +YIHRC
Sbjct: 394 IDVHQVSLVINYDLPSNRENYIHRC 418
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHT------SD 426
++G++ ++ ++ E FR GK ++ T++ +RG+D + VINYD P+
Sbjct: 374 LSGEITIEQRIAVLERFRLGKEKLLITTNVSARGIDVEQVTLVINYDMPMDMQGKADFET 433
Query: 427 YIHRCGRAGRLG 462
Y+HR GR GR G
Sbjct: 434 YLHRIGRTGRFG 445
>SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11)
Length = 87
Score = 51.6 bits (118), Expect = 6e-07
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +1
Query: 295 LGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
L +++ F++ + ++ T++ RG+D R + V NYD P + Y+HR RAGR G+
Sbjct: 2 LARYQQFKNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 58
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 51.2 bits (117), Expect = 8e-07
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +1
Query: 169 QNERRPVMIFSNQTSGCDFVS-IPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISC 345
+N + VM+F + + + S + + I+G+ Q + F F + K ++ C
Sbjct: 815 KNRSKKVMVFFSSCNSVKYHSELLNYIDLPVLEIHGKQKQQKRTTTFFEFCNAKSGILLC 874
Query: 346 TDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPGSHVTSFV 495
TD+ +RGLD ++ YD +YIHR GR R G+ H F+
Sbjct: 875 TDVAARGLDIPEVDWIVQYDPADDPKEYIHRVGRTAR-GTEGKGHALLFL 923
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
++ M + +L + F++ ++ TD+ +RGLD HVI+Y P Y+HR G
Sbjct: 486 LHASMQQRQRLKNLDRFKASNTGLLLATDVAARGLDIANIEHVIHYQVPKDPEVYVHRSG 545
Query: 445 RAGR 456
R R
Sbjct: 546 RTAR 549
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
++G +P + + + FR GK + TD+ +RGLD V+ + P YIHR G
Sbjct: 334 LHGDIPQKQREVTLKSFREGKFRCLVATDVAARGLDIPEIDLVVQCEPPKDVDAYIHRSG 393
Query: 445 RAGRLG 462
R GR G
Sbjct: 394 RTGRAG 399
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 292 KLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
+L E +S ++ TD+ +RG+D + V+N D P + Y+HR GRAGR G+
Sbjct: 253 RLEAMEKLKSFHCRILISTDLTARGIDAENVNLVVNMDVPHNGETYLHRIGRAGRFGT 310
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 277 MPVQLKLGKF-EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAG 453
+P K KF FR+G++ ++ T+ RGLD HV + P + +Y+H CGR G
Sbjct: 461 IPDPTKYHKFLRDFRTGQIQLLVGTEETVRGLDFKELDHVYLMEVPKNVEEYLHLCGRVG 520
Query: 454 RLGSP 468
R G P
Sbjct: 521 RQGRP 525
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
FR+GK+ V+ T+++ RG+D + VINYDFP YIHR G
Sbjct: 429 FRTGKIWVLIATELMGRGIDFKGVNLVINYDFPTSAVAYIHRIG 472
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +1
Query: 259 ININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHR 438
+ I+G + ++ F G +V+ TD+ S+GLD HVIN+D P +Y+
Sbjct: 115 VAIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVLL 174
Query: 439 CGR 447
CG+
Sbjct: 175 CGQ 177
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +1
Query: 259 ININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHR 438
+ I+G + ++ F G +V+ TD+ S+GLD HVIN+D P +Y+
Sbjct: 115 VAIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVLL 174
Query: 439 CGR 447
CG+
Sbjct: 175 CGQ 177
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPGSHV 483
F SG++ ++ T GLD + +I+Y+ P Y+ GRAGR G P HV
Sbjct: 834 FMSGELRAVAATVAFGMGLDKSDVRAIIHYNMPKSFESYVQEIGRAGRDGKPSHCHV 890
>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 352 IVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+ +RG+D + VIN+DFP ++ Y+HR GR+GR G
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFG 38
>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 352 IVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+ +RG+D + VIN+DFP ++ Y+HR GR+GR G
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFG 38
>SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18)
Length = 282
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRA 450
+MFR ++N++ T +V GLD + + V+ +DFP + Y+ GRA
Sbjct: 138 KMFRKHQINLLVATSVVEEGLDVPKCNFVVRFDFPQNFRSYVQSKGRA 185
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F+ K V+ TD+ +RG+D +VIN+ FP ++HR GR R G
Sbjct: 521 FQHKKTMVMVVTDVAARGIDIPMLDNVINFHFPPKAKLFVHRVGRVARAG 570
>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 358 SRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
SRGLD HVI DF + +HR GR R GS
Sbjct: 109 SRGLDIPNVTHVIQLDFATDAAQMLHRVGRTARAGS 144
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 295 LGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
LG+F S K+ V+ T + G+D H+I++ P Y+ GR GR G
Sbjct: 302 LGEFIKSNS-KIRVVVATCALGMGVDIPDVDHIIHFGIPSEVEHYVQEIGRGGRDG 356
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 391 VINYDFPLHTSDYIHRCGRAGRLGS 465
VIN+D P +Y+H+ GRAGRLG+
Sbjct: 400 VINFDMPPTYEEYVHQIGRAGRLGA 424
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 370 DTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
D + VIN+DFP T DY+HR GR R
Sbjct: 351 DISDIKFVINFDFPNCTEDYVHRIGRTAR 379
>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
Length = 1463
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
FR+G++ ++ T ++ GLD + V+ +D ++ + GRA R
Sbjct: 613 FRTGRIKLLISTSVLEEGLDVPVCNLVVRFDSTMNLKSLVQSRGRASR 660
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 322 GKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSP 468
GKV VI T G+D V ++ P Y GRAGR G P
Sbjct: 297 GKVAVICATISFGMGVDKGDVRFVAHWSLPQSMEGYYQESGRAGRDGQP 345
>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
Length = 798
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 364 GLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
G+D +VI+Y P Y CGRAGR G
Sbjct: 47 GIDKGDVRYVIHYSMPKSLEGYYQECGRAGRDG 79
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTT 378
++G + +L + F++G+V+++ TD+ +RGLD T
Sbjct: 38 LHGNLTQLQRLEALQKFKNGEVDILVATDLAARGLDIT 75
>SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 364 GLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
G+D H+I+Y P Y+ GR GR G
Sbjct: 2 GVDIPDVDHIIHYGIPSEVEHYVQEIGRGGRDG 34
>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYD 405
E F+ G VN++ T + GLD VI YD
Sbjct: 992 EEFKKGVVNILIATSVAEEGLDIKDCSFVIRYD 1024
>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
Length = 1970
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 416 TRLTTSTGAGARAGWD-PRPDPTSPASWPGPAGRAGPEDRDLGQANSDLPHVNANIKRVI 592
T+ T A GW P PT W G + PE LG+ + +P++N K VI
Sbjct: 1021 TKYITYLDANNLYGWAMSNPLPTHGFRWMGDQELSAPESIGLGKVDKLVPNLNDKTKYVI 1080
>SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 316 RSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
+ G V ++ T G+D VI+Y YI GRAGR GS
Sbjct: 343 QDGTVRLLIATIAFGMGVDCKGVKRVIHYGPSKSVEAYIQETGRAGRDGS 392
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 162 SGSEREETGDDLQQSDVW 215
SGSER++ GDDL Q W
Sbjct: 41 SGSERDQVGDDLPQEGTW 58
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +2
Query: 470 PDPTSPASWPGPAGRAGPEDRDLGQANSDLPHVNANIKRVIREGLSG*AGL 622
P P PG G AGP+ R +P +N + +G SG GL
Sbjct: 510 PGIQGPQGLPGKQGPAGPQGRQGASGPPGIPGLNGTVGPRGPQGFSGPRGL 560
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 452 AGWDPRPDPTSPASWPGPAGRAGPE 526
AG P P SP S PGP G GP+
Sbjct: 622 AGLPGPPGPASPPSPPGPPGPPGPK 646
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 470 PDPTSPASWPGPAGRAGPE 526
P P SP S PGP G GP+
Sbjct: 798 PGPASPPSPPGPPGPPGPK 816
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 470 PDPTSPASWPGPAGRAGPE 526
P P SP S PGP G GP+
Sbjct: 883 PGPASPPSPPGPPGPPGPK 901
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
+M + V+ T G+D + VI++ F +Y GRAGR
Sbjct: 346 DMPPESRSQVVVATVAFGMGIDKSNVRFVIHHSFSKSMENYYQESGRAGR 395
>SB_59278| Best HMM Match : Helicase_C (HMM E-Value=0.00034)
Length = 144
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 331 NVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSP 468
+V+ T G+D V+ + P Y GRAGR G P
Sbjct: 79 HVMCATKAFGLGIDQKNVRFVVPHIMPECVEHYYEEAGRAGRDGDP 124
>SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 280 PVQLKLGKFEMFR--SGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAG 453
P + K E F+ G V V+ T G+D H I++ + +I GRAG
Sbjct: 211 PKENKDAILESFKRLDGHVQVLVATIAFGMGIDCKGVHRTIHFGPSKNCEAFIQETGRAG 270
Query: 454 R 456
R
Sbjct: 271 R 271
>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
Length = 584
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 503 GQATKLVTWDPGGDPSRPARP 441
GQ T L+ WD G D RP RP
Sbjct: 413 GQDTMLMLWDLGDDVLRPQRP 433
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 446 ARAGWDPRPDPTSPAS 493
A+A WDPRP P P S
Sbjct: 870 AKAAWDPRPPPPCPIS 885
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 431 STGAGARAGWDPRPDPTSPASWPGPAGRAGPEDRD 535
S G +G RP P P PGP+G +G R+
Sbjct: 652 SQGMPGMSGPPGRPGPPGPPGPPGPSGPSGSNGRN 686
>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 443 GARAGWDPRPDPTSPASWPGPAGRAGPE 526
G RAG R P P PGP G G E
Sbjct: 60 GLRAGGPGRRGPVGPPGVPGPRGMQGEE 87
>SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)
Length = 88
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +2
Query: 455 GWDPRPDPTSPASWPGPAGRAGPEDRDLGQANSDLPHVNANIKRVIR 595
G+ P P +PG G GP D G A DL + K +R
Sbjct: 25 GYQGAPGPKGTGGFPGEKGDEGPRGED-GSAGDDLAFRDPRGKTALR 70
>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1737
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 542 DRGLDLLDQLDPRGQATKLVTWDPGGDPSR 453
DR ++L Q+DP+ ++TKL+T+ D ++
Sbjct: 1028 DRESNVLVQIDPKNKSTKLITFQSMADNAK 1057
>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1661
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 90 TTCAAEI-LTSREGAQARGTPQTCPSGSEREETGDDLQQS 206
T C ++I +T+R+GA + T PSG R + D L+Q+
Sbjct: 318 TPCYSKITVTTRDGAWSATTTLNLPSGGTRRQQIDRLRQA 357
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,682,861
Number of Sequences: 59808
Number of extensions: 481686
Number of successful extensions: 1775
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -