Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021358
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       66   3e-13
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   1.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 66.1 bits (154), Expect = 3e-13
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
 Frame = +1

Query: 97  VPQKFLRLGKAHKPAELLKLVQADQNERRPV---MIFSNQTSGCDFVSIPEREQR*-CIN 264
           V Q F  + + +K  +LLK +   +N+   +   ++F       DF+++   E      +
Sbjct: 422 VEQNFYEVAR-NKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTS 480

Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
           I+G    + +      F+SG+++++  T + +RGLD     HVINYD P    +Y+HR G
Sbjct: 481 IHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIG 540

Query: 445 RAGRLGS 465
           R GR+G+
Sbjct: 541 RTGRVGN 547


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 197 KIITGLLSF*SAWTSLRSSAGL--CAFPRRKNFCGTCGNIRCI 75
           ++   +LS+ S W S+  SA    C   RRK   G+C N  CI
Sbjct: 61  RVTCDVLSWQSKWLSINHSACAIRCLAQRRKG--GSCRNGVCI 101


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 146 SSAGLCAFPRRKNFCGT 96
           S+ G C +PR KN  GT
Sbjct: 137 STGGSCYWPRGKNLGGT 153


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 336 DINFPGSEHFKLPQLQLYRHLAVD 265
           D+     E+ +LPQLQL ++   D
Sbjct: 198 DVPLVVDENIELPQLQLVKNYTAD 221


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 258 ASTLFSFRNRHEVAARRLIAEDHHRSPLVLIRLDKFEEFRGLVRLPET 115
           +STL SF          L+    H   LVL  LD+F  F G  +L  T
Sbjct: 554 SSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPF-GRFKLANT 600


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 428 TSTGAGARAGWDPRPDPTSPASW 496
           TST      G    P P+SP+S+
Sbjct: 77  TSTSPSYPGGGSSSPSPSSPSSF 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,629
Number of Sequences: 438
Number of extensions: 4532
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)