Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021358
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 79 3e-15
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 77 1e-14
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 73 1e-13
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 7e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 67 1e-11
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 67 1e-11
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 67 1e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 2e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 65 4e-11
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 65 5e-11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 65 5e-11
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 64 6e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 64 6e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 64 6e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 63 1e-10
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 63 1e-10
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 63 1e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 62 3e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 61 6e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 61 6e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 61 6e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 8e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 8e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 61 8e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 61 8e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 61 8e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 61 8e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 60 1e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 58 4e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 58 4e-09
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 57 1e-08
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 57 1e-08
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 57 1e-08
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 56 2e-08
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 56 2e-08
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 56 2e-08
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 55 4e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 55 4e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 55 4e-08
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 55 4e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 54 7e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 54 7e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 54 9e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 54 9e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 54 9e-08
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 54 1e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 3e-07
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 52 5e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 51 8e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 48 4e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 8e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 48 8e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 47 1e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 2e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 46 3e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 7e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 44 1e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 4e-04
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 42 5e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 41 7e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.003
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 38 0.008
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 36 0.025
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 35 0.044
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 34 0.077
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 34 0.10
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 34 0.10
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 33 0.14
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 33 0.14
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 33 0.14
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 32 0.31
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 31 0.54
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 30 1.3
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 30 1.3
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 28 6.7
At5g35670.1 68418.m04261 calmodulin-binding family protein conta... 28 6.7
At3g51350.1 68416.m05622 aspartyl protease family protein contai... 28 6.7
At3g51340.1 68416.m05620 aspartyl protease family protein contai... 28 6.7
At2g29870.1 68415.m03627 major intrinsic family protein / MIP fa... 28 6.7
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 28 6.7
At2g36050.1 68415.m04426 ovate protein-related contains TIGRFAM ... 27 8.9
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 79.0 bits (186), Expect = 3e-15
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*-CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
MIF+ G F+++ R I I+GQM +LG F++G+ N++ CTD+ SRG
Sbjct: 264 MIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRG 323
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
LD VINYD P ++ DYIHR GR R G
Sbjct: 324 LDIPSVDVVINYDIPTNSKDYIHRVGRTARAG 355
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 76.6 bits (180), Expect = 1e-14
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Frame = +1
Query: 46 ESLKMVRTSNIHRILPHVPQKFLRL-GKAHKPAELLKLVQADQNERRPVMIFSNQTSGCD 222
+ ++ +RTS +H+ + + F++L G K LL++++ + VM+F N +
Sbjct: 325 QGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSR 384
Query: 223 FVS-IPEREQR*CININGQMPVQLKLGKFEMFRS--GKVNVISCTDIVSRGLDTTRTHHV 393
V Q +N +G++P + ++ + F+ G + CTD+ +RGLD HV
Sbjct: 385 AVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHV 443
Query: 394 INYDFPLHTSDYIHRCGRAGRLGSPPGSHVTSFVA 498
+ +DFP ++ DY+HR GR R+G+ VTS V+
Sbjct: 444 VMFDFPKNSIDYLHRTGRTARMGAK--GKVTSLVS 476
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 73.3 bits (172), Expect = 1e-13
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Frame = +1
Query: 118 LGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSIPER-EQR*CININGQMPVQLK 294
+ ++ K +L+KL++ + R +++F + GCD ++ R + ++I+G +
Sbjct: 325 ISESQKYNKLVKLLEDIMDGSR-ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAER 383
Query: 295 LGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPG 474
FRSGK +++ TD+ +RGLD +VINYDFP DY+HR GR GR G+ G
Sbjct: 384 DWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA-KG 442
Query: 475 SHVTSF 492
+ T F
Sbjct: 443 TAYTFF 448
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.7 bits (158), Expect = 7e-12
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Frame = +1
Query: 97 VPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVS--IPEREQR*CININ 270
+ Q + + ++ K L KL+ D+ + ++F N CD ++ + + R
Sbjct: 551 ISQHVIMMKESEKFFRLQKLL--DELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHG 608
Query: 271 GQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRA 450
G+ Q ++ E FR+ + NV+ TD+V RG+D HVINYD P H Y HR GR
Sbjct: 609 GKSQEQREIS-LEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRT 667
Query: 451 GRLG 462
GR G
Sbjct: 668 GRAG 671
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/106 (33%), Positives = 51/106 (48%)
Frame = +1
Query: 148 LKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGK 327
L+ + Q V+IF + CD ++ Q I+G + FRSG+
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGR 452
Query: 328 VNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
V+ TD+ +RGLD V+NYDFP DY+HR GR GR G+
Sbjct: 453 TPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGA 498
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/106 (33%), Positives = 51/106 (48%)
Frame = +1
Query: 148 LKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGK 327
L+ + Q V+IF + CD ++ Q I+G + FRSG+
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGR 452
Query: 328 VNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
V+ TD+ +RGLD V+NYDFP DY+HR GR GR G+
Sbjct: 453 TPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGA 498
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/106 (33%), Positives = 51/106 (48%)
Frame = +1
Query: 148 LKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGK 327
L+ + Q V+IF + CD ++ Q I+G + FRSG+
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGR 452
Query: 328 VNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
V+ TD+ +RGLD V+NYDFP DY+HR GR GR G+
Sbjct: 453 TPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGA 498
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/106 (34%), Positives = 51/106 (48%)
Frame = +1
Query: 148 LKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGK 327
L+ + Q V+IF + CD ++ + I+G + FRSGK
Sbjct: 670 LEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGK 729
Query: 328 VNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
V+ TD+ +RGLD VINYDFP DY+HR GR GR G+
Sbjct: 730 SCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGA 775
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 65.3 bits (152), Expect = 4e-11
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Frame = +1
Query: 103 QKFLRLGKAHKPAELLKLV-QADQNERRPVMIFSNQTSGCDFVSIPERE-QR*CININGQ 276
Q+F+ K K L+ ++ Q + R MIF + C +S+ E + I ++
Sbjct: 276 QQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSL 335
Query: 277 MPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
++L F+SGKV ++ TD+ SRGLD VINYD P DY+HR GR R
Sbjct: 336 NSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTAR 395
Query: 457 LG 462
G
Sbjct: 396 AG 397
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 64.9 bits (151), Expect = 5e-11
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +1
Query: 103 QKFLRLGKAHKPAELLKLVQA-DQNERRPVMIFSNQTS-GCDFVSIPEREQR*CININGQ 276
Q +++L + K +L L+ A D N+ V+IF S + + I I+
Sbjct: 182 QHYIKLSEMEKTRKLNDLLDALDFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSG 238
Query: 277 MPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
M + +L +++ F+ G ++ TD+V RG+D R + VINYD P Y+HR GRAGR
Sbjct: 239 MSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 298
Query: 457 LGSPPGSHVTSFVA 498
G+ G +T FVA
Sbjct: 299 FGT-KGLAIT-FVA 310
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 64.9 bits (151), Expect = 5e-11
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +1
Query: 103 QKFLRLGKAHKPAELLKLVQA-DQNERRPVMIFSNQTS-GCDFVSIPEREQR*CININGQ 276
Q +++L + K +L L+ A D N+ V+IF S + + I I+
Sbjct: 265 QHYIKLSEMEKTRKLNDLLDALDFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
Query: 277 MPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
M + +L +++ F+ G ++ TD+V RG+D R + VINYD P Y+HR GRAGR
Sbjct: 322 MSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
Query: 457 LGSPPGSHVTSFVA 498
G+ G +T FVA
Sbjct: 382 FGT-KGLAIT-FVA 393
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 64.5 bits (150), Expect = 6e-11
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Frame = +1
Query: 139 AELLKLVQADQNERRPVMIF-SNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMF 315
A+++ L++ Q PV+IF N+ D + + I+G + + F
Sbjct: 384 AKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSF 443
Query: 316 RSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
++GK +V+ TD+ S+GLD HVINYD P +Y+HR GR GR G
Sbjct: 444 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 492
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 64.5 bits (150), Expect = 6e-11
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +1
Query: 103 QKFLRLGKAHKPAELLKLVQA-DQNERRPVMIFSNQTS-GCDFVSIPEREQR*CININGQ 276
Q +++L + K +L L+ A D N+ V+IF S + + I I+
Sbjct: 265 QHYIKLSEMEKNRKLNDLLDALDFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
Query: 277 MPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
M + +L +++ F+ G ++ TD+V RG+D R + VINYD P Y+HR GRAGR
Sbjct: 322 MSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
Query: 457 LGSPPGSHVTSFVA 498
G+ G +T FVA
Sbjct: 382 FGT-KGLAIT-FVA 393
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 64.5 bits (150), Expect = 6e-11
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = +1
Query: 13 LPETVNNFVAAESLKMVRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVM 192
+P + F + +K V T N+ R + + A+++ L++ Q PV+
Sbjct: 294 MPAKIQIFATSALVKPV-TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVL 352
Query: 193 IF-SNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGL 369
IF N+ D + + I+G + + +F++GK +V+ TD+ S+GL
Sbjct: 353 IFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGL 412
Query: 370 DTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
D HVINYD P +Y+HR GR GR G
Sbjct: 413 DFPDIQHVINYDMPGEIENYVHRIGRTGRCG 443
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = +1
Query: 259 ININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHR 438
++I+G + +F+ G ++ TD+ +RGLD VINY FPL T DY+HR
Sbjct: 394 VSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHR 453
Query: 439 CGRAGRLGSPPGSH 480
GR GR G +H
Sbjct: 454 IGRTGRAGKKGVAH 467
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +1
Query: 187 VMIFSNQTSGCDFVSIPER-EQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSR 363
++IF GCD V+ R + + I+G + F+SG+ +++ TD+ +R
Sbjct: 413 ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAAR 472
Query: 364 GLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
GLD V+NYDFP DYIHR GR GR G+
Sbjct: 473 GLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGA 506
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/106 (32%), Positives = 50/106 (47%)
Frame = +1
Query: 148 LKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGK 327
L+ + Q ++IF + CD ++ I+G + FRSG+
Sbjct: 464 LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGR 523
Query: 328 VNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
V+ TD+ +RGLD V+NYDFP DY+HR GR GR G+
Sbjct: 524 TPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGA 569
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CIN-INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
+IF N D++S R ++ ++G MP + + FRSG V+ TD+ +RG
Sbjct: 278 VIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARG 337
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+D + VINYD P + YIHR GR+GR G
Sbjct: 338 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 369
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/67 (38%), Positives = 39/67 (58%)
Frame = +1
Query: 262 NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRC 441
+I+G Q + + F+SG+ ++ TD+ +RGLD HV+N+D P DY+HR
Sbjct: 447 SIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 506
Query: 442 GRAGRLG 462
GR GR G
Sbjct: 507 GRTGRAG 513
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 256 CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
C I+ +M + F FR+G + CTD+ +RG+D + VIN+DFP + Y+H
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
Query: 436 RCGRAGRLG 462
R GR+GR G
Sbjct: 448 RVGRSGRFG 456
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 256 CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
C I+ +M + F FR+G + CTD+ +RG+D + VIN+DFP + Y+H
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
Query: 436 RCGRAGRLG 462
R GR+GR G
Sbjct: 448 RVGRSGRFG 456
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 61.3 bits (142), Expect = 6e-10
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Frame = +1
Query: 13 LPETVNNFVAA--ESLKMVRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRP 186
LP + F A ++VR ++I P + FL + K + LL LV+ + +
Sbjct: 214 LPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQ 273
Query: 187 VMIFSNQTSGCDFV-SIPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSR 363
+IF + +FV S+ + E G M + FR+ K ++ TDI +R
Sbjct: 274 TLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAAR 333
Query: 364 GLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
G+D +VIN+DFP ++HR GRA R G
Sbjct: 334 GIDIPLLDNVINWDFPPRPKIFVHRVGRAARAG 366
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 256 CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
C I+ +M + F FR+G + CTD+ +RG+D + VIN+DFP + Y+H
Sbjct: 395 CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
Query: 436 RCGRAGRLG 462
R GR+GR G
Sbjct: 455 RVGRSGRFG 463
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 256 CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
C I+ +M + F FR+G + CTD+ +RG+D + VIN+DFP + Y+H
Sbjct: 395 CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
Query: 436 RCGRAGRLG 462
R GR+GR G
Sbjct: 455 RVGRSGRFG 463
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I+G Q + F++G+ ++ TD+ +RGLD HV+N+D P DY+HR G
Sbjct: 435 IHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 494
Query: 445 RAGRLGS 465
R GR G+
Sbjct: 495 RTGRAGN 501
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +1
Query: 262 NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRC 441
+I+G Q + F++G+ ++ TD+ +RGLD HV+N+D P DY+HR
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 442 GRAGRLG 462
GR GR G
Sbjct: 497 GRTGRAG 503
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +1
Query: 262 NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRC 441
+I+G Q + F++G+ ++ TD+ +RGLD HV+N+D P DY+HR
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 442 GRAGRLG 462
GR GR G
Sbjct: 497 GRTGRAG 503
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 256 CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIH 435
C I+ +M + F FR+G + CTD+ +RG+D + VIN+DFP + Y+H
Sbjct: 418 CFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 477
Query: 436 RCGRAGRLG 462
R GR+GR G
Sbjct: 478 RVGRSGRFG 486
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/66 (42%), Positives = 41/66 (62%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I+ +P + + FR+G+ V+ TD+++RG+D + VINYDFP S YIHR G
Sbjct: 410 IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIG 469
Query: 445 RAGRLG 462
R+GR G
Sbjct: 470 RSGRAG 475
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CIN-INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRG 366
+IF N D+++ R ++ ++G + + FRS K V+ +D+ +RG
Sbjct: 265 IIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARG 324
Query: 367 LDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+D HVINYD P + YIHR GRAGR G
Sbjct: 325 IDVQTVSHVINYDIPNNPELYIHRIGRAGRFG 356
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +1
Query: 145 LLKLVQADQNERRPVMIFSNQTSGCDFVSIPE-REQR*CININGQMPVQLKLGKFEMFRS 321
LL+L+ + +E+ +++F CD + + C++++G + F++
Sbjct: 766 LLELL-GEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKN 824
Query: 322 GKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
N++ T + +RGLD V+N+D P H DY+HR GR GR G
Sbjct: 825 DVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAG 871
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
FRSG V+ TD+++RG+D + VIN+D P +Y+HR GR+GR G
Sbjct: 324 FRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFG 373
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
FRSG V+ TD+++RG+D + VIN+D P +Y+HR GR+GR G
Sbjct: 326 FRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFG 375
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
FRSG V+ TD+++RG+D + VIN+D P +Y+HR GR+GR G
Sbjct: 324 FRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFG 373
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
+ G M + R G ++ TDI +RG+D T H+ N+D P +DY+HR G
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAG 430
Query: 445 RAGR 456
RAGR
Sbjct: 431 RAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
+ G M + R G ++ TDI +RG+D T H+ N+D P +DY+HR G
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAG 273
Query: 445 RAGR 456
RAGR
Sbjct: 274 RAGR 277
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/91 (28%), Positives = 44/91 (48%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGL 369
++F+ D +S C ++G + + FR G N++ TD+ +RGL
Sbjct: 353 IVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGL 412
Query: 370 DTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
D +I+Y+ P +T ++HR GR GR G
Sbjct: 413 DVPNVDLIIHYELPNNTETFVHRTGRTGRAG 443
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Frame = +1
Query: 133 KPAELLKLVQADQNERRPVMIFSNQTSG--CDFVSIPEREQR*CININGQMPVQLKLGKF 306
KP L+ L+++ + E+ + S +T+ C ++ + +G + L+ +
Sbjct: 312 KPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKEL 371
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+ FR G + V+ +D ++RG+D +VINYD P +IHR GR R G
Sbjct: 372 KAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAG 423
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Frame = +1
Query: 43 AESLKMVRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCD 222
A+ + +V N ++ V Q + + K +L ++++ + + P +++ + G D
Sbjct: 312 AKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGAD 371
Query: 223 FVS--IPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVI 396
++ I ++I+G+ P++ + F G+V V+ T ++ RG+D VI
Sbjct: 372 LLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVI 431
Query: 397 NYDFPLHTSDYIHRCGRAGRLG 462
+D P +YIH GRA R+G
Sbjct: 432 VFDMPSTIKEYIHVIGRASRMG 453
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Frame = +1
Query: 43 AESLKMVRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCD 222
A+ + +V N ++ V Q + + K +L ++++ + + P +++ + G D
Sbjct: 175 AKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGAD 234
Query: 223 FVS--IPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVI 396
++ I ++I+G+ P++ + F G+V V+ T ++ RG+D VI
Sbjct: 235 LLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVI 294
Query: 397 NYDFPLHTSDYIHRCGRAGRLG 462
+D P +YIH GRA R+G
Sbjct: 295 VFDMPSTIKEYIHVIGRASRMG 316
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 55.2 bits (127), Expect = 4e-08
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Frame = +1
Query: 76 IHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRP-VMIFSNQTSGCDFVS-IPEREQ 249
+HR P + QK++ + + L++ V+ + N M+F+N + V+ I E+
Sbjct: 389 LHRNSPRLKQKWVEVTVDSQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKAS 448
Query: 250 R*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDY 429
C + + + FR V CTD +RG+D HVI DF D+
Sbjct: 449 IQCYRYHKNHKLDERANILADFRETG-GVFVCTDAAARGVDVPNVSHVIQADFASSAVDF 507
Query: 430 IHRCGRAGRLG 462
+HR GR R G
Sbjct: 508 LHRIGRTARAG 518
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
++G + +L E+FR +V+ + TD+ +RGLD VINY P Y+HR G
Sbjct: 442 LHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVG 501
Query: 445 RAGRLG 462
R R G
Sbjct: 502 RTARAG 507
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 54.4 bits (125), Expect = 7e-08
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F+S N++ T + +RGLD V+N+D P H DY+HR GR GR G
Sbjct: 660 FKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAG 709
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 54.0 bits (124), Expect = 9e-08
Identities = 28/91 (30%), Positives = 42/91 (46%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGL 369
++F+ D VS+ ++G + + FR GK V+ TD+ SRGL
Sbjct: 355 IVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGL 414
Query: 370 DTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
D VI+Y+ P ++HR GR GR G
Sbjct: 415 DIPNVDLVIHYELPNDPETFVHRSGRTGRAG 445
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/91 (27%), Positives = 45/91 (49%)
Frame = +1
Query: 190 MIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGL 369
++F+ D ++ + C ++G + + FR G +++ TD+ +RGL
Sbjct: 365 IVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGL 424
Query: 370 DTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
D VI+Y+ P +T ++HR GR GR G
Sbjct: 425 DVPNVDLVIHYELPNNTETFVHRTGRTGRAG 455
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
++G M + + F F++ K V+ TD+ +RGLD + +I YD P ++Y+HR G
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVG 438
Query: 445 RAGRLG 462
R R+G
Sbjct: 439 RTARIG 444
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/104 (26%), Positives = 50/104 (48%)
Frame = +1
Query: 145 LLKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CININGQMPVQLKLGKFEMFRSG 324
LL ++ Q +++ ++ FS S + + C+ I G + + F F
Sbjct: 390 LLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKA 449
Query: 325 KVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
+ ++ CT++ +RGLD ++ YD P + +DYIHR GR R
Sbjct: 450 ETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTAR 493
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +1
Query: 169 QNERRPVMIFSNQTSGCDF-VSIPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISC 345
+N + +M+F + F I + +I+G M + F F K ++ C
Sbjct: 331 KNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLC 390
Query: 346 TDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
TD+ +RGLD +I YD P ++YIHR GR R
Sbjct: 391 TDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTAR 427
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/124 (21%), Positives = 57/124 (45%)
Frame = +1
Query: 85 ILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSIPEREQR*CIN 264
+ P + + F++ + K A L ++ + R ++ ++ T + +
Sbjct: 473 LAPKIEESFIKCEEKEKDAYLYYILSV-HGQGRTIVFCTSVTDLRHISGLLKILGLDVCT 531
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
+ +M + +L + FR+ + ++ TD+V+RG+D +I+Y P Y+HRCG
Sbjct: 532 LFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCG 591
Query: 445 RAGR 456
R R
Sbjct: 592 RTAR 595
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
++G ++ + F+SG +V+ TD+ +RGLD V+NYD ++HR G
Sbjct: 503 LHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIG 562
Query: 445 RAGRLGSPPG 474
R GR G G
Sbjct: 563 RTGRAGDRDG 572
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +1
Query: 292 KLGK---FEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
KLG+ + F++G++ V+ ++ +RGLD V+N + P Y HR GR GRLG
Sbjct: 443 KLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLG 502
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
++G++P + FR+GK + T++ +RGLD +I + P YIHR G
Sbjct: 376 LHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSG 435
Query: 445 RAGRLGS 465
R GR G+
Sbjct: 436 RTGRAGN 442
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/77 (32%), Positives = 35/77 (45%)
Frame = +1
Query: 232 IPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFP 411
IP + I I+G M + F + CTD+ +RGLD +V+ YD P
Sbjct: 297 IPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPP 356
Query: 412 LHTSDYIHRCGRAGRLG 462
+ + HR GR RLG
Sbjct: 357 QDPNMFNHRAGRTARLG 373
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Frame = +1
Query: 106 KFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTS---GCDFVSIPEREQR*CININGQ 276
++L+ K ++L+ L+ ++N++ V + G IP + + +G+
Sbjct: 243 EYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGK 302
Query: 277 MPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
M + + F V+ CTD+ +RGLD +V+ YD P +IHR GR R
Sbjct: 303 MDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTAR 362
Query: 457 L 459
+
Sbjct: 363 M 363
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 262 NINGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTR-THHVINYDFPLHTSDYIHR 438
+++G+M + ++G + F + +V+ CTD+++RGLD + V+ D P + YIHR
Sbjct: 347 SLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHR 405
Query: 439 CGRAGR 456
GR R
Sbjct: 406 VGRTAR 411
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Frame = +1
Query: 130 HKPAELLKLVQADQNERRPVMIFSNQTSGCD-----FVSIPERE-QR*CININGQMPVQL 291
+K LL++++ +N +IF N+ C F + +E Q + + + +
Sbjct: 621 NKKTALLQIME--ENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQES 678
Query: 292 KLGKFEMFRSGKVNVIS----CTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGR 456
+L + F S + S CTD SRG+D + HV+ +DFP S+Y+ R GR R
Sbjct: 679 RLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTAR 737
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +1
Query: 355 VSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPGSHVT 486
V RG+D + H VIN+D P + YIHR GR GR S GS V+
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYS-SGSSVS 438
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFP--LHTSD-----YIHRCGRAGRLG 462
F+ V+ TD+++RG D R + V+NY+ P T + Y+HR GRAGR G
Sbjct: 386 FKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFG 442
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I+ + P + + FR K ++ +D+ +RG+D V+ P YIHR G
Sbjct: 670 IHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLG 729
Query: 445 RAGRLG 462
R GR G
Sbjct: 730 RTGRKG 735
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Frame = +1
Query: 118 LGKAHKPAELLKLVQADQ-NERRPVMIFSNQTSGCDFVSIPEREQR*CININGQ---MPV 285
L A++ +LL L+++ E R ++++ D +S R+ IN G +P
Sbjct: 465 LSGANRMKDLLILMESPPYKEIRSIIVYCKFQYETDMISKYLRDNN--INAKGYHSGLPA 522
Query: 286 QLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
+ ++ E F S K+ V+ T GLD VI++ P +Y+ GRAGR G
Sbjct: 523 KDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDG 581
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I+ + P + + FR K ++ +D+ +RG+D V+ P YIHR G
Sbjct: 368 IHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLG 427
Query: 445 RAGRLG 462
R GR G
Sbjct: 428 RTGRKG 433
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 265 INGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCG 444
I+ + P + FR K ++ +D+ +RG+D V+ P YIHR G
Sbjct: 342 IHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLG 401
Query: 445 RAGRLG 462
R GR G
Sbjct: 402 RTGRKG 407
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/59 (38%), Positives = 27/59 (45%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPGSHV 483
E FR+G NVI T I GLD VI +D + I R GR GR + HV
Sbjct: 521 EKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRIPHV 579
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRA 450
E FR G VN+I T I+ GLD + VI +D + +I GRA
Sbjct: 440 EDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRA 487
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 35.1 bits (77), Expect = 0.044
Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
Frame = +1
Query: 46 ESLKMVRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDF 225
+SL++ R + + K+ + K +P + L+ + D+ + + +++ S C
Sbjct: 383 KSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVYCLSKSECVD 442
Query: 226 VS--IPEREQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVIN 399
V+ + E+ + + + +P + ++ +++G+V ++ T G+D VI+
Sbjct: 443 VAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIH 502
Query: 400 YDFPLHTSDYIHRCGRAGRLG 462
Y GRAGR G
Sbjct: 503 NTLSKAVESYYQESGRAGRDG 523
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGS 465
FR G V ++ T + GLD + + V+ +D YI GRA + GS
Sbjct: 719 FRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGS 769
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F+ ++ +D+ +RG++ VI P YIHR GR GR G
Sbjct: 680 FKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREG 729
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F+ ++ +D+ +RG++ VI P YIHR GR GR G
Sbjct: 633 FKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREG 682
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRC-GRAGR 456
E F GK+ ++ CT+IV GLD + +I D +++ GR GR
Sbjct: 526 ERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGR 576
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 325 KVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
++N+I T G++ VI++ P Y CGRAGR G
Sbjct: 676 EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 721
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 325 KVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
++N+I T G++ VI++ P Y CGRAGR G
Sbjct: 723 EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 768
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRA 450
F+S ++N++ T + GLD VI YD P + +I GRA
Sbjct: 567 FQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRA 612
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +1
Query: 268 NGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGR 447
N +P + + F K+ V+ T G+D +I+Y + Y GR
Sbjct: 528 NASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGR 587
Query: 448 AGRLG 462
AGR G
Sbjct: 588 AGRDG 592
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 307 EMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDY 429
++F+ GKVN++ TD+V G ++ +D P Y
Sbjct: 415 DLFQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 313 FRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLG 462
F++ V V+ ++++ GL+ +++ + P Y HR GR R G
Sbjct: 661 FKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAGRMRRPG 710
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 187 VMIFSNQTSGCDFVSIPER-EQR*CININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSR 363
++IF GCD V+ R + + I+G + F+SG+ +++ TD+ +R
Sbjct: 413 ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAAR 472
Query: 364 GL 369
GL
Sbjct: 473 GL 474
>At5g35670.1 68418.m04261 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 442
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 117 SREGAQARGTPQTCPSGSEREETGDDLQQS 206
+++ +A+ TP +C +G+E EET L S
Sbjct: 412 TKKAKKAKTTPTSCKTGNECEETSHKLNSS 441
>At3g51350.1 68416.m05622 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 248 NVDASTSTARCRYS*SWGSLKCSDPGKLMSFRVLIS 355
N ++S+ RC +GS KCS P + +++ S
Sbjct: 157 NASTTSSSIRCSDKRCFGSKKCSSPSSICPYQISYS 192
>At3g51340.1 68416.m05620 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 518
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 248 NVDASTSTARCRYS*SWGSLKCSDPGKLMSFRVLIS 355
N ++S+ RC +GS KCS P + +++ +S
Sbjct: 146 NASTTSSSIRCSDKRCFGSGKCSSPESICPYQIALS 181
>At2g29870.1 68415.m03627 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 139
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 34 FVAAESLKMVRTSNIHRILPHVPQ---KFLRLGKAHKPAELLKL 156
++ A +L V + IH++LP +P KF + G +HK L L
Sbjct: 96 YLLAPTLGAVSRALIHKMLPSIPNAEPKFSKTGSSHKRVSDLPL 139
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 89 YHMCRRNSYVSGRRTSPRNSSNLSKRIRTRGD 184
+HM + NS R + RNSS + +R RG+
Sbjct: 139 FHMFQANSRHFDRHVNERNSSEIDNMMRARGN 170
>At2g36050.1 68415.m04426 ovate protein-related contains TIGRFAM
TIGR01568 : uncharacterized plant-specific domain
TIGR01568
Length = 261
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 233 FLNENNVDASTSTARCRYS*SWGSLKCSDPGKLMSFRVLISF 358
FLN+N+ +S S+ S W S C+ K +SFR I+F
Sbjct: 5 FLNKNHSTSSYSSNSSSSSWPWPS--CNQNPKTLSFRATITF 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,138
Number of Sequences: 28952
Number of extensions: 324066
Number of successful extensions: 1106
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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