Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021357
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    33   0.030
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    31   0.21 
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    28   1.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   7.9  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   7.9  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 512 FAKRGQVYLKLNKPNACIKDCTHALELN 595
           F  R   YLK+  P  CI+DC  A+EL+
Sbjct: 436 FGNRAAAYLKVMAPAECIRDCNKAIELD 463


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 435 FSEQKYDEAINLYTAAIQLNPQSAFCLLNGDR 530
           + E+KY EAI  YT AI L   SA  +   +R
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNR 65


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 518 KRGQVYLKLNKPNACIKDCTHALELN 595
           +RG  YL+L  P+   +D  H+LEL+
Sbjct: 80  RRGLAYLRLGHPHLANRDWEHSLELD 105


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 519  LANKKHSVDLIVWLQYID**LRRIFVPRMLSLLQSAF 409
            L N +HSV  +    YID    R + PRM+S+ + AF
Sbjct: 1317 LFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKPAF 1353


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 536 LKLNKPNACIKDCTHALELNCDSAPTNSEGEHIGSWVNFEESSH 667
           L   K  + +KD  H+L+L+  S P+N +        N    SH
Sbjct: 3   LHSKKSTSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASESH 46


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 88  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 213
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,470
Number of Sequences: 5004
Number of extensions: 49735
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)