Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021357
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 57 2e-08
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 41 0.001
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 31 0.87
08_02_1582 + 28007169-28007188,28007278-28007312,28007945-280081... 31 0.87
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 31 0.87
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 30 1.5
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 29 4.6
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559... 28 6.1
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 6.1
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 28 6.1
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 28 8.1
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 28 8.1
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +1
Query: 67 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATF 204
+A ++ +L++FVE CK P LL P LAFF+DYL SLG LP A F
Sbjct: 227 DASRVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAF 272
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 306 LDMEG-VIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAA 482
L++EG ++ D D Q MGDP+ AM A SE K +EAI+ T A
Sbjct: 325 LELEGDIVESDHQDPPQKMGDPSIDVTEENRDASQEAKSKAMEAMSEGKLEEAIDHLTKA 384
Query: 483 IQLNPQSA 506
I LNP SA
Sbjct: 385 ILLNPLSA 392
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 509 LFAKRGQVYLKLNKPNACIKDCTHALELNCDSAP-TNSEGEHIGSWVNFEESSHDL 673
++ R V++K+ KP A I+D ALE+N DSA + G +EE++HDL
Sbjct: 394 MYGTRASVFIKMKKPVAAIRDANAALEINPDSAKGYKTRGMAYAMLGKWEEAAHDL 449
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 488 IKSTECFLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAP-TNSEGEHIGSWVNFEESS 664
+ T +A R +++K KPNA I+D AL++N DSA S G +EE++
Sbjct: 508 LNPTSAIAYATRAVIFVKSKKPNAAIRDADAALKINPDSAKGYKSRGMAKAMLGKWEEAA 567
Query: 665 HDLCESLKI 691
DL + K+
Sbjct: 568 QDLRMAAKL 576
Score = 25.4 bits (53), Expect(2) = 1.1
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3
Query: 447 KYDEAINLYTAAIQLNPQSA 506
K DEAI T AI LNP SA
Sbjct: 494 KLDEAIEHLTEAIVLNPTSA 513
Score = 23.8 bits (49), Expect(2) = 1.1
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +3
Query: 306 LDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQK 449
+++EG D Q MGDP+ + AFSE K
Sbjct: 417 IELEGEAVEPDNDPPQKMGDPSVEVSDEKRDQAQLCKNKGVDAFSEGK 464
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 515 AKRGQVYLKLNKPNACIKDCTHALELN 595
+ R +LKL K + IK+CT ALELN
Sbjct: 256 SNRAVCFLKLGKYDETIKECTKALELN 282
>08_02_1582 +
28007169-28007188,28007278-28007312,28007945-28008130,
28008783-28008962,28009290-28009474,28009593-28009688,
28009888-28009933,28010054-28010160,28010893-28010994,
28011080-28011614,28012296-28012366,28012747-28012830
Length = 548
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 674 KDRGKILQNLPKSLYARPRNL*GRCH 597
KD+ +++NL K LYA RN GRCH
Sbjct: 123 KDKISVIRNLAKVLYAHQRN--GRCH 146
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 435 FSEQKYDEAINLYTAAIQLNPQSAFCLLNGDRC 533
F EQKY +A+ YT AI+ NP+ N C
Sbjct: 424 FKEQKYPDAVKHYTEAIRRNPKDPKVYSNRAAC 456
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 432 AFSEQKYDEAINLYTAAIQLNPQSA 506
AF E+++ +AIN YT AI+LN + A
Sbjct: 499 AFKEKQWQKAINFYTEAIKLNNKVA 523
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 435 FSEQKYDEAINLYTAAIQLNPQSAFCLLNGDRC 533
F +QKY EA+ Y+ A++ NP+ N C
Sbjct: 574 FKQQKYPEAVKHYSEALRRNPKDPRVYSNRAAC 606
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 521 RGQVYLKLNKPNACIKDCTHALE 589
R VYL++ K + CI DC A+E
Sbjct: 449 RAAVYLEMGKYDECINDCDKAVE 471
>10_08_0571 -
18855317-18855541,18855667-18855747,18855849-18855963,
18856061-18856224,18856307-18856540,18856626-18856781,
18857113-18857244,18857850-18857984,18858071-18858457,
18858708-18858826,18858914-18859124,18859268-18859339,
18859542-18859628,18859993-18860127,18860240-18860368
Length = 793
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 509 LFAKRGQVYLKLNKPNACIKDCTHALELNCDSAPT-NSEGEHIGSWVNFEESSHDL 673
L+ R KL C++DC A+ ++ + A G S+ N+ S HDL
Sbjct: 108 LYVNRASTMHKLGLLEECLRDCDRAISVSPNYAKAWYRRGMVNASFRNYSSSIHDL 163
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 182 TPRDIR*SLKNANCGWCNSC 123
T + + L+ CGWCNSC
Sbjct: 756 TDQKLSVELRKEKCGWCNSC 775
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +3
Query: 429 RAFSEQKYDEAINLYTAAIQLNPQ----SAFCLLN 521
+AF KY EA+ YTAA+ N + SA C N
Sbjct: 809 KAFQAGKYSEAVEHYTAALLSNTESPRFSAICFAN 843
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 429 RAFSEQKYDEAINLYTAAIQLNPQSAFCLLNGDRC 533
+AF E Y AI YT A++L+P A N C
Sbjct: 365 KAFEEGDYAGAIIFYTEAMKLDPADATLYSNRSLC 399
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +2
Query: 431 SILGTKIRRSY*SIYCSHTIKSTECFLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAP 610
S+L T +R+ + Y HT S + + + + L ACI H + C
Sbjct: 217 SLLATIAQRNNSTYYDLHTFTSADDRTKSVLQRAFFSLG---ACINAFVHCRSVLCIDGT 273
Query: 611 TNSEGEHIGSWVNFEESSH 667
+E E+ SW F E H
Sbjct: 274 FLTESENTESWYWFLERVH 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,118
Number of Sequences: 37544
Number of extensions: 304078
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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