Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021357
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 49   4e-06
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.38 
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)                  31   1.2  
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 30   1.5  
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +2

Query: 509 LFAKRGQVYLKLNKPNACIKDCTHALELNCDSAP----TNSEGEHIGSWVNFEESSHDLC 676
           LFAKR   ++++ KPNA I+DC  A ++N DSA          E +G W   E++  DL 
Sbjct: 84  LFAKRASCFIRMKKPNAAIRDCDKAAQINPDSAQIYKWRGRAHEFLGHW---EKADKDLA 140

Query: 677 ESLKI 691
           ++LK+
Sbjct: 141 QALKL 145


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 488 IKSTECFLFAKRGQVYLKLNKPNACIKDCTHALEL 592
           +  T+  LF+ R   +LKLNKP   + DC   L+L
Sbjct: 893 LTKTDHRLFSNRALCHLKLNKPKEALADCESCLKL 927


>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 491 KSTECFLFAKRGQVYLKLNKPNACIKDCTHALELN 595
           KST   L+  R  V  KL K +  I+DCT A+ L+
Sbjct: 67  KSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMNLD 101


>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
          Length = 264

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 491 KSTECFLFAKRGQVYLKLNKPNACIKDCTHALELN 595
           KST   L+  R  V  KL K +  I+DCT A+ L+
Sbjct: 67  KSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMNLD 101


>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 592

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 488 IKSTECFLFAKRGQVYLKLNKPNACIKDCTHALELNCD 601
           +K T+ F    R + YLKL K +A  +D   ALE + D
Sbjct: 45  LKPTDPFCLVARSKCYLKLGKNDAAYRDAEAALEEDKD 82


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 432 AFSEQKYDEAINLYTAAI 485
           AF +QKY+EA+ LYT A+
Sbjct: 130 AFKQQKYEEAVKLYTQAL 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,932
Number of Sequences: 59808
Number of extensions: 363862
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)