Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021357
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.4  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 671 DRGKILQNLPKSLYARPRNL*GRCHSSTLRHVCSL*YMHLVCLV 540
           D  K L++LP+S+    + L  +C S      C   Y  + C V
Sbjct: 76  DVQKALRHLPRSMQDSTKKLFNKCKSIQNEDPCEKAYQLVKCYV 119


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +1

Query: 187 LPTATFGAKDFTAAGDKKSSNEEKWNRHLTRNRSLNQM*N*IWKVS*LLIKQTNLKTWVI 366
           +P    G + +T     +   E  +NR+LTR R +            L + +  +K W  
Sbjct: 5   VPERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE-------IAHALCLTERQIKIW-F 56

Query: 367 QTRRSLKKKE 396
           Q RR   KKE
Sbjct: 57  QNRRMKWKKE 66


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 678 SQRSWEDSSKFTQEPICSPSEF 613
           S+  WED +    EP   PS+F
Sbjct: 684 SRLDWEDHASSPLEPSAVPSKF 705


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 166 LISLGVSLPTATFGAKDFTAAGDKKSSNEEKW 261
           L+  G++LP A  G K +      K S+ E W
Sbjct: 249 LLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVW 280


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 166 LISLGVSLPTATFGAKDFTAAGDKKSSNEEKW 261
           L+  G++LP A  G K +      K S+ E W
Sbjct: 302 LLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVW 333


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 658 FFKIYPRAYMLALGICRGAVTVQL*GMCAVFNTCI 554
           FF+   +A+M ALG    A T+ +   C   N  I
Sbjct: 346 FFRGMMQAWMTALGTASSAATLPITFRCLEENNKI 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,287
Number of Sequences: 438
Number of extensions: 3401
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)