Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021356
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   3.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   3.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   3.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   3.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.5  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -2

Query: 534 HYQRQRSSLKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 364
           HY R+RS  ++       +  +Y    +++++ ++ + + + Y  S    + + ++E   
Sbjct: 230 HYSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSY 289

Query: 363 EKISDSDKQTILDK 322
            K  ++ K+   D+
Sbjct: 290 RKYRETSKERSRDR 303


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 573  RYREVHQQGEQDHHYQRQRSSLKEEIERMVNEAEKYRNEDDKQKE 439
            R REVH  G+Q+    R R +L    ++   + ++ + +  +Q++
Sbjct: 1425 REREVHNGGQQE---DRDRKTLTSAPQQPQQQQQQQQQQQQQQQQ 1466


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 534 HYQRQRSSLKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 364
           HY R+RS  ++       +  +Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 363 EKISDSDKQ 337
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 534 HYQRQRSSLKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 364
           HY R+RS  ++       +  +Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 363 EKISDSDKQ 337
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 534 HYQRQRSSLKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 364
           HY R+RS  ++       +  +Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 363 EKISDSDKQ 337
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 534 HYQRQRSSLKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 364
           HY R+RS  ++       +  +Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 363 EKISDSDKQ 337
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 534 HYQRQRSSLKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 364
           HY R+RS  ++       +  +Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 219 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 278

Query: 363 EKISDSDKQ 337
            K  ++ K+
Sbjct: 279 RKYGETSKE 287


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 393 KSTMEDEKLKEKISDSDKQTILDKCN 316
           + +++ EK+K  +S    +T+  KCN
Sbjct: 331 RCSVKREKIKISVSYPSTETLNTKCN 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,707
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)