Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021354
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    26   0.24 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.56 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   5.3  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -3

Query: 275 IGILYMKINVN*SFTQYYRRITSIIIFHK---LQ*YIPQHNLVY--ILKTADCESEAGAR 111
           +G+   +  +  SFT Y    T  +IFH    ++ +     + +  I+K   CE +    
Sbjct: 139 VGVRMFQYYIGRSFTYYVCNTTIFLIFHSVLPIKRFFTSLGIAFDNIMKNLICEIDGRHE 198

Query: 110 FFFCLFTS 87
           FF   F S
Sbjct: 199 FFLAEFKS 206


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 385 LAQHGVQCGAGRGPLWL 435
           LA+H V C   RG LWL
Sbjct: 369 LARHAVACFLTRGDLWL 385


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 574 NTIPHNLIMSSSVRTPAPAATVPSAMH 654
           N  PH    SS + TP+P+A+  +  H
Sbjct: 253 NITPHGSNTSSLITTPSPSASPLAYQH 279


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 498 LISYVWRELERQ*WPARASLPVRIAEYYTAQSYNVIVSPDTRSGRHC 638
           L +Y W +++R   P      +  AE+ T  S + + SPD  S   C
Sbjct: 194 LPTYKWMQVKRN-VPKPTVPKIPPAEFPTTSSSSALESPDPASRSSC 239


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 372 LMTMHVRIHDGPPT 331
           ++  H+R+H G PT
Sbjct: 209 VLQQHIRLHTGEPT 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,316
Number of Sequences: 336
Number of extensions: 3313
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)