Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021354
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    29   0.61 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    29   0.61 
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    29   0.81 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   4.3  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    26   4.3  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   5.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.9  

>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -2

Query: 321 HPSSLNESKYDLVLANRHP-LHENKR*LKLHPVLSAYHKYNYFPQTTIIYS 172
           HPSSL+  +   +   R+P ++++ R ++   +  AY+KY +FP T + +S
Sbjct: 275 HPSSLHMHRIKKIA--RYPYMYDDARMMEQSLLNLAYNKYGWFPWTRLDFS 323


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 216 TPIILGEASVNVYFHVKDADLPIQ 287
           TP++LG   +  +F V+D DL IQ
Sbjct: 828 TPVVLGSRLIESFFEVEDNDLTIQ 851


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -2

Query: 375 RLMTMHVRIHDGPPTTPAHPSSLNESKYDLVLANRHPLHENKR*LK-LHPVLSAYHK-YN 202
           +L+    +I     + P  P  +++S    ++ N HP H +   +  ++P    +H  +N
Sbjct: 269 QLIRFSTQIRSSSTSPPRSPLIISDSPSSSIIHNPHPTHPSASAMNYMNPCFLEFHAFFN 328

Query: 201 Y---FPQTTIIYSTTQSCLHT 148
           Y   F ++   YST+ +  +T
Sbjct: 329 YPMKFARSRSAYSTSANYSNT 349


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 544 HAPLSPSALQNTIPHNLIMSSSVRTPAPAATVPSAMHTSQT 666
           H  LSP    N+ P  L  + S  +PAP +T+ +A+   +T
Sbjct: 155 HNNLSPYRSPNSYPSLLPSTHSPHSPAPLSTMQTALMRLRT 195


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 541 PHAPLSPSALQNTIPHNLIMSSSVRTPAP---AATVPSAMHTSQ 663
           PH+ LSPS     +P N  +SSS    +P   +A +P+ + TS+
Sbjct: 443 PHS-LSPSQPPVVVPSNTTISSSPPLTSPVKTSANIPNLLPTSE 485


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 178 IFHNTILFTYLKLRTVSQRRGHGF 107
           + HN IL  Y +LRTV + RG  F
Sbjct: 112 VVHNGILTNYRELRTVLESRGMVF 135


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 541 PHAPLSPSAL-QNTIPHNLIMSSSVRTPAPAATVPSAMHTSQTAP 672
           P A   PS L Q+ +P  L   SSV +PAP  +V    + SQ  P
Sbjct: 271 PQAHPLPSHLSQSNVPPQL-SHSSVPSPAPPRSVSQPTYFSQPMP 314


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 563 PHCRILYRTIL*CHRQSGHPLRPPLYRPPCTPR 661
           P+  +   T +    QSG+PL  PL++P   P+
Sbjct: 235 PNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQ 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,978
Number of Sequences: 5004
Number of extensions: 50164
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)